- Probe CUST_30149_PI390587928
- Source Contig U35_11785
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30149_PI390587928 | Hv_44K_v2 | AATTTGAATTGTGCATTGCTGTTACAGTGTGGTGGCAACAGTGAAACATTTGGAGTTAAA | 619 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.612 | 2.513 | 0.904 | 1.071 | 0.584 | 0.711 |
| Raw | 126.111 | 189.493 | 60.658 | 110.996 | 21.709 | 29.412 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357752 | 1263 | 2e-23 | 1196 - 1253 | 100 | 58 / 58 | plus | ABC23996 |
| MLOC | MLOC_38606.8 | 1739 | 2e-23 | 1478 - 1535 | 100 | 58 / 58 | plus | ABC23996 ABC45547 |
| MLOC | MLOC_38606.9 | 1238 | 2e-23 | 977 - 1034 | 100 | 58 / 58 | plus | ABC23996 ABC45547 |
| MLOC | MLOC_38606.6 | 1300 | 2e-23 | 993 - 1050 | 100 | 58 / 58 | plus | ABC23996 ABC45547 |
| JLOC1 | JLOC1_25121.4 | 1808 | 1e-23 | 1463 - 1520 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_25121.3 | 1327 | 1e-23 | 982 - 1039 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_25121.2 | 1226 | 1e-23 | 881 - 938 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_25121.1 | 1344 | 1e-23 | 999 - 1056 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC23996 | 691 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | ABC23996 |
| Harvest35 | U35_11785 | 691 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus |
Contig Sequence (691 bp)
>U35_11785 691 Hv_44K_v2 GCACGAGGAGAAAATGGGTGGCCTTCTTCAAAGATATTGGAGACAGCACCTTCAAGCGAC GCAGACAGGGAGAAGTTAATTGACGTTATTCAGGACTGGAAAACAGAGAGGTATAAGGCA ATAATCAAATCTGGAACTGTGGAGCCTAGACCTGGTGTTTTGCGGCTGATGGATGAAGTT AAGGGCGATGATGTTAAACTGAAAAAACCCGATCCATCGATATATATTACAGCAGCAAAG AAACTAGGAATAGAAAGCAAGAACTGCCTTGTGGTAGAAGACAGTGTCATTGGACTACAA GCAGCAAAAGGAGCAGGGATGTCATGTATAATAACATACACACCTTCAACTTCGAACCAA GATTTCAAGGATGCAATTGCAACCTACCCTGATCTCAGTAACGTGAGGCTTGAGGACCTG AAGCTACTGCTCCAAGAATCCCTCGTCACTGGATAGTGGAATTCAGCCTTTTTCGGTTGC TGGCGATCCTACCCCCTAGCCCTAGGGGGTTCAATCCACCCAGGGGTTGGATGATCCCCA CCTCTCACCCGATCCCCACTAATTCCTTCACCACCAGAATCCCTAAACTAAATCACTGCT CGGTTAAACCTCTTGTCGAAATTTGAATTGTGCATTGCTGTTACAGTGTGGTGGCAACAG TGAAACATTTGGAGTTAAAAAAAAAAAAAAA
Homology of Contig U35_11785 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g38777.1 | 315 | 4e-78 | |
| Arabidopsis v10 | None |