barSeed - Barley Seed Development Database

Probe ABC23499

Source Contig ABC23499

barSeed

Links

Affymetrix Source Sequence (826 bp)

>ABC23499 826
GTTTGATGGATTTGGTTATGCATTCCCTCGAGGCTCTCCACTCACACCTGATATTTCTAG
GGGAATACTGAAATTCGCATCGGATGACAGAATGGTTAAGATGCAGAATGAATTGTATGG
CTATACTTCATGCCCCGACAAAGATGACTCCCAAACTTCAAGCAGCCTTACATTGCACAG
CTTTCAGGGGCTGTTCATCATCAGCGGAGTATCTTCAGTGCTGGCATTAGTCCTGCACGC
TGTCATAACCATTTATAACAACCGACATGAATTCAGCAGTGACAGCAGTCAGAGTTCATG
GCGCAGATGGCCTGTCGTTCTCTCCAAGCTCTTCCACGGGGACGATAGTCCTTCCAACAC
TCCAGTTGAAGATGAAGCCGCAACGGAAAATGTTGGTAGTGCAGTTGAGACCCCACTGAG
CATACGCATACCTGGTCACATTGTCGAGCACCTGTCAAACACGGAGACAGGAAGCCCACA
GGAAGGAGAAGGAACACCAGGCAGGGAGATCTCGGTTCAGGACACGGAACCGCTGTCGTT
TGCTTACATGCATTTTGAGAGGGGGCAAAACAGAGTAGCTTCCTTGTCTCGCAGTGGGAG
CTCAATCCGCAGGAGACAGATAAGCATGGAATGAACTACTGCTTGATGAGCGCGTAAATT
ACTGATCGCTGTAAGCCTGTAATTTAGTACTAGTAGTTCATTTAGCTGTCTGTATGTACA
TGTTTAGAGTTTATCTCTTGTGGAACGCAATGCTTGATGTGCATTGCCACATTGGCGGTT
GGTGATAGATGTGAGGAGCAAGCGATTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK365357	3343	0.0	2430 - 3236	99	805 / 807	CUST_11982_PI390587928	ABC23499
MLOC_38071.1	1625	0.0	1 - 782	99	781 / 782	CUST_11982_PI390587928	ABC23499
MLOC_44275.6	2973	0.0	8 - 780	85	677 / 801	None	ABC23499
MLOC_44275.4	2945	0.0	38 - 810	85	677 / 801	None	ABC23499
MLOC_44275.1	3332	0.0	119 - 891	85	677 / 801	None	ABC23499
MLOC_44275.3	1522	0.0	48 - 820	85	677 / 801	None	ABC23499
MLOC_44275.7	2986	0.0	8 - 780	85	677 / 801	None	ABC23499
MLOC_44275.5	2977	0.0	38 - 810	85	677 / 801	None	ABC23499
MLOC_44275.2	1014	0.0	73 - 826	84	659 / 782	None	ABC23499
AK369503	2975	1e-62	2313 - 2563	84	212 / 252	CUST_33332_PI390587928 CUST_38194_PI390587928	ABC23499 ABC33963
MLOC_5097.1	1490	1e-62	689 - 939	84	212 / 252	CUST_33332_PI390587928 CUST_38194_PI390587928	ABC23499 ABC33963