barSeed - Barley Seed Development Database

Probe CUST_38194_PI390587928

Source Contig U35_38124

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38194_PI390587928	Hv_44K_v2	GCTGTTTTCCAGATCTGTCACATATCACATATGGAATGCAATGTGCACTTAGACAGTAAA	14	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.805	2.355	1.298	0.821	0.760	0.688
Raw	26.015	31.774	15.964	15.452	3.909	4.541

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5097.1	1490	9e-22	1298 - 1356	98	58 / 59	plus	ABC23499 ABC33963
MLOC	AK369503	2975	3e-21	2922 - 2975	100	54 / 54	plus	ABC23499 ABC33963
JLOC1	JLOC1_3250.1	1365	5e-22	1294 - 1352	98	58 / 59	plus
Harvest21	ABC33963	654	3e-25	15 - 74	100	60 / 60	minus	ABC33963
Harvest35	U35_38124	654	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (654 bp)

>U35_38124 654 Hv_44K_v2
TTTTTTTTTTTTTTTTTACTGTCTAAGTGCACATTGCATTCCATATGTGATATGTGACAG
ATCTGGAAAACAGCATCAGGTGGCACCTTATAATACAGATTTGGACGCCAGATTAAATGT
TCTTGCATCAATCTATGCGTTAAAAGGCCTAAACATAAATACAAATCAACAGACAAACGA
ATAAAGAATTACGGCCATCAGTAGTTATACGCTCACCGTGTAGTTCACTGCACGCTTATC
AGTAGTCGTCAGGCTGCATGCGTACAACTACAAAGAAAGGTGGTTTTGCACTTCACACTC
GTGATCCTTGTCCTTCTGGCGGGCTTCCTGTACTACCAACATTTGCCACTGGTCTCATCA
CTATTTGGGGTGTATTACTCTTGTGGGAGAGCTTGGACCAAATGGCAAGCCATCTGCTGA
ATACACCTTTATTGGTTATGAGAGCATGCAGGATCAATGCCAGGATTGAACATGCGCCGG
AGATGCCGAACAACCCCTGAAAGCTGTGCAATGTAAGGTTGCTTGAAGTTTGGGAGTCAT
CTTTGTCGGGGCATGACTTATCACCGTACAATTCTTTCTGAAGTTCAGCCATTCTGCCAC
TCGATGACAGATTCAGTATTCCCCTCGTGATATCAGGCCGTGAGTGGAGAGCCC

Homology of Contig U35_38124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None