barSeed - Barley Seed Development Database

Probe ABC21103

Source Contig ABC21103

barSeed

Links

Affymetrix Source Sequence (699 bp)

>ABC21103 699
CGGGCTAGCGGTAGCACAAGGGTGCAGGATGCGTGGGGCTAAGCGGATTATTGGAGTGGA
TCTTAACACGGAGAAGTGGGACATCGGTAAGAGGCTGGGAATCACCGACTTCATCAATCC
GAACGACATTGGGGAGAAGGCCGTGAGCGAGGTCATCACGGAGATGACCGGCGGTGGCGC
CGACTACTGCTTCGAGTGCATCGGCTCGACGTCGGTCATGGCGGAGGCGTTCCAAAGCTC
CCGGAAGGGCTGGGGGAAGACGGTCGTGCTCGGCGTCTCCAGGGGCGGCGCGCCGATCAG
CATTCCGCCGAACGACATCCTCTGGGGGAGGTCGGTCGTCGGCTCGCTCTTCGGCGGGTT
GAAGCCCAAGACCGACGTCCCTATCCTGGCGCAGAAATACATGGACAAGAAGCTGGAGCT
GGACGAGTTCGTGACGCACGAGATGGGGTTCGACGACATCAACGGGGCGTTCGAGCTGCT
CACCCAGGGGAAGTGCCTCAGGTGCATCATCTGGATGGATGGGGCCAAGGAGACCGGTGT
CGGCGTGGAAAATGGAGGCGCCTGCAAGGCCAAGGCGTGATTGACATCGTTGTCCTCTCG
TCACTAGCCACGATAGTCACTGCTCGTCTGTGGGCGACTTCTTGTTGTCATGGGCTTTCG
CTATAATTTTTTTTTCATTTGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_59746.1	1862	7e-114	1024 - 1246	100	223 / 223	CUST_26621_PI390587928	ABC21103
MLOC_59746.4	1700	2e-128	783 - 1031	100	249 / 249	CUST_26621_PI390587928	ABC21103
MLOC_59746.2	1482	4e-71	1337 - 1482	100	146 / 146	None	ABC21103
MLOC_59746.5	939	7e-114	715 - 937	100	223 / 223	None	ABC21103
MLOC_59746.3	1568	4e-71	1423 - 1568	100	146 / 146	None	ABC21103
MLOC_59746.7	930	4e-81	765 - 928	100	164 / 164	None	ABC21103