barSeed - Barley Seed Development Database

Probe CUST_26621_PI390587928

Source Contig U35_24241

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26621_PI390587928	Hv_44K_v2	ATAGTCACTGCTCGTCTGTGGGCGACTTCTTGTTGTCATGGGCTTTCGCTATAATTTTTT	612	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.256	0.819	2.611	4.380	1.087	0.956
Raw	2.639	26.084	71.020	184.648	14.909	15.560

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59746.1	1862	9e-22	1699 - 1753	100	55 / 55	plus	ABC21103
MLOC	MLOC_59746.4	1700	9e-22	1484 - 1538	100	55 / 55	plus	ABC21103
JLOC1	JLOC1_38898.2	909	5e-22	703 - 757	100	55 / 55	plus
JLOC1	JLOC1_38898.1	1625	5e-22	1419 - 1473	100	55 / 55	plus
Harvest21	ABC21103	699	3e-25	613 - 672	100	60 / 60	plus	ABC21103
Harvest35	U35_24241	699	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_24241 699 Hv_44K_v2
CGGGCTAGCGGTAGCACAAGGGTGCAGGATGCGTGGGGCTAAGCGGATTATTGGAGTGGA
TCTTAACACGGAGAAGTGGGACATCGGTAAGAGGCTGGGAATCACCGACTTCATCAATCC
GAACGACATTGGGGAGAAGGCCGTGAGCGAGGTCATCACGGAGATGACCGGCGGTGGCGC
CGACTACTGCTTCGAGTGCATCGGCTCGACGTCGGTCATGGCGGAGGCGTTCCAAAGCTC
CCGGAAGGGCTGGGGGAAGACGGTCGTGCTCGGCGTCTCCAGGGGCGGCGCGCCGATCAG
CATTCCGCCGAACGACATCCTCTGGGGGAGGTCGGTCGTCGGCTCGCTCTTCGGCGGGTT
GAAGCCCAAGACCGACGTCCCTATCCTGGCGCAGAAATACATGGACAAGAAGCTGGAGCT
GGACGAGTTCGTGACGCACGAGATGGGGTTCGACGACATCAACGGGGCGTTCGAGCTGCT
CACCCAGGGGAAGTGCCTCAGGTGCATCATCTGGATGGATGGGGCCAAGGAGACCGGTGT
CGGCGTGGAAAATGGAGGCGCCTGCAAGGCCAAGGCGTGATTGACATCGTTGTCCTCTCG
TCACTAGCCACGATAGTCACTGCTCGTCTGTGGGCGACTTCTTGTTGTCATGGGCTTTCG
CTATAATTTTTTTTTCATTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42924.1	391	6e-97	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi1g21300.1	409	2e-100
Arabidopsis v10	AT1G22440.1	386	2e-69	Zinc-binding alcohol dehydrogenase family protein \| chr1:7922560-7924759 FORWARD LENGTH=386