barSeed - Barley Seed Development Database

Probe ABC21021

Source Contig ABC21021

barSeed

Links

Affymetrix Source Sequence (708 bp)

>ABC21021 708
GCCCACGTGGGGTGGTCAAAGTTTACCCACGCGAAGGCGATATCTGGGCTTTGTACCAAA
ACTGGTCCCCTGAATGGGATGAAGATACTCCAACTAATGTGCTGCATGTCTATGATCTGG
TTGAGATACTGGATGATTATGACGAAGATCAAGGAATCTCTGTCATTCCCTTGGTTAAGG
TTACTGGATTTCGAACAGTTTTTCAGCGTCACCAGAACCGGGACGTCATCAAGAGGATTC
CAAAAGGGGAGATGTTTCGGTTTTCACATCAGGTCCCCTTCTATAAGTTGTCAGGGGAAG
AAGCTCCAAACGTCCCCAAAGATAGCTATGAGGTAGACCCAGCTGCCATTTCTAAAGAAC
TTCTTCAGGGGATCACAGAAACGGCGGAGGAGGCAGAAGGAACTTCTAAATCCAGTTGAG
ACGGTTGATGCTGTGACTCCATTATGCCTTTGTTGACCTGCCAGCCCTTTTGAATCAAAC
ATTTGTTGGCACTAGCTAGCTTCTGTAGTGTTTCCTAGCTTCTATACTTTGACAGTTACC
TCTGCGTACAACGGCTGGTCTGGGGCTAGCCATTCCTGTCTTGTATGCCATGTGTCTTGC
CGTCTCATCAATGAAGCTCATGATGTGAGTAAGCGGCAGTCATTTTGTATGTCAGAAAAA
GTATCTTATATGTGCTGTTTTACCTTGTGCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11370.1	5010	0.0	1315 - 2005	99	691 / 692	CUST_24332_PI390587928 CUST_39904_PI390587928	ABC21021 ABC22074
MLOC_11370.3	2365	0.0	430 - 1120	99	691 / 692	CUST_39904_PI390587928 CUST_24332_PI390587928	ABC21021 ABC22074
MLOC_11370.4	3894	0.0	3156 - 3846	99	690 / 692	CUST_39904_PI390587928 CUST_24332_PI390587928	ABC21021 ABC22074
MLOC_11370.5	2743	0.0	1 - 588	100	588 / 588	CUST_24332_PI390587928	ABC21021 ABC22074
MLOC_17825.1	2237	2e-169	334 - 902	86	497 / 580	CUST_36986_PI390587928 CUST_31235_PI390587928	ABC21021 ABC22074
MLOC_17825.2	1848	1e-106	59 - 433	85	328 / 384	None	ABC21021 ABC22074