- Probe CUST_31235_PI390587928
- Source Contig U35_27288
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31235_PI390587928 | Hv_44K_v2 | TGGGCATGTGTCTTGTCATCTCAAAACTTAAACAGTGATGCTGATAATGTGAGTTAGAGA | 380 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.752 | 1.482 | 1.158 | 0.872 | 0.420 | 0.371 |
| Raw | 1683.803 | 2288.435 | 1539.287 | 1857.499 | 307.402 | 299.302 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_17825.1 | 2237 | 2e-24 | 254 - 313 | 100 | 60 / 60 | minus | ABC21021 ABC22074 |
| JLOC1 | JLOC1_12310.1 | 2070 | 8e-25 | 1805 - 1864 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22074 | 456 | 3e-25 | 381 - 440 | 100 | 60 / 60 | plus | ABC22074 |
| Harvest35 | U35_27288 | 456 | 3e-25 | 381 - 440 | 100 | 60 / 60 | plus |
Contig Sequence (456 bp)
>U35_27288 456 Hv_44K_v2 TCAGGATCAGGATGTCATCAAGAGGATTCCAAAAGGAGAGATGTTTCGGTTTTCACATCA GGTTCCCTTTTACAGGATGTCAGGGGAAGAAGCTCCAAATGTCCCCAAAGATAGCTATGA GGTAGATCCAGCTGCTATCTCTAAAGAACTTCTTCAGGGGATCACAGAAACTGTGAAGGA GGCAGAGGGAACTTCTAAATGCTGATTAAAAAAGTTGATGCTGACTCATTTATGCCTTTG TTGACCTGCCGTTTTGAATCAAATATTTGTTGACATTTGCTAGTTTCTATAGTTTCCTAG CCTCTACCACTTTGACAATCACCTTTGTATACAGTTGTTGGTCTGGGGCTAGCCATTCCT AAATCATCTTGTATGGCATCTGGGCATGTGTCTTGTCATCTCAAAACTTAAACAGTGATG CTGATAATGTGAGTTAGAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_27288 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |