barSeed - Barley Seed Development Database

Probe ABC20798

Source Contig ABC20798

barSeed

Links

Affymetrix Source Sequence (691 bp)

>ABC20798 691
CGACGGGCAGAGATACTCTGCTCATCGCTGTGTCGTTGCTGCCCGGTCGTCTGTCTTCAA
GGCGGAGCTCCTCGGCGCCATGGAGGAGAGTTCCGGTAGTACCATTGTCATCCGTGACAT
GGAAGCTGATGTGTTCGAGTCCTTGCTCCATTTCATGTACACCGACTCGGTTCCTCCGGT
GCTTGATGTGGTGATGGCTGGCCATCTACTTGTCGCGGCTGACAGGTACAACATCGGTAG
GCTGAAGGTGATATGCGAGGACAAATTGTGCAGTCACATTGATTCCAACATGGTGGCTAC
CAGCTTGGCTTTGGCTGAGCAACATGGTTTCCGTCGTCTCAAAGAAGCTTGTTTGCAGTT
CCTTGCTTCTCCGTCCAATTTGGATGCTATGATGTCAAGTGATGGGTATGAGCATCTGAA
ATCCAGCTGCCCCGCAGTTCTTAAGGAGCTGATAGCTAGAATCATCCCGGCTGAATTTAC
ATCAGCAAAGGATATTATCATGACAATGTGGAAGTAATGCTTTCCGTACCATTATTATAC
TCCAAATTTTAGTACCAAATGATATTATGCTACATCTCGGTTTGGAGTAGAATCTTTATT
ATCCCCTGCTCATGTATGTGGAACATGTTTTTCACTTTCAGTGAGATATTAATGAAATTC
AATGGATTTCGGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_64045.1	1670	0.0	34 - 708	100	675 / 675	CUST_3181_PI390587928 CUST_14575_PI390587928	ABC20798
MLOC_38270.2	1711	8e-148	335 - 855	85	443 / 521	None	ABC20798
MLOC_38270.3	1022	8e-148	90 - 610	85	443 / 521	None	ABC20798
MLOC_38270.1	1615	8e-148	249 - 769	85	443 / 521	None	ABC20798
MLOC_38270.4	1277	2e-144	1 - 515	85	437 / 515	None	ABC20798
MLOC_67373.2	1195	9e-123	146 - 633	83	405 / 488	None	ABC20798
MLOC_67373.1	1306	9e-123	146 - 633	83	405 / 488	None	ABC20798
MLOC_38270.5	1138	1e-91	2 - 286	88	251 / 285	None	ABC20798