barSeed - Barley Seed Development Database

Probe CUST_14575_PI390587928

Source Contig U35_8764

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14575_PI390587928	Hv_44K_v2	AGAATTGCGACGATTTCATATCTCTGTATGTACGCCATGAATCGGCCGATGCCAAACAAG	513	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.607	0.947	3.017	4.133	1.367	0.766
Raw	8.979	20.253	62.591	135.590	16.171	9.149

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64045.1	1670	2e-24	1007 - 1066	100	60 / 60	minus	ABC20798
JLOC1	JLOC1_42009.1	1650	8e-25	982 - 1041	100	60 / 60	minus
Harvest21	ABC18788	847	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_8764	847	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (847 bp)

>U35_8764 847 Hv_44K_v2
GAGAAAACCTAACGCAACAATCTCCTCTCGGCTCCGCCGCCACCCCTTTTCCGGCGGTCT
CTCCCCCCGATCCTCTCCGCTCCCGCCGCCGCGCTCAGTTTCTCCCTGCTTGCGACCCGC
TCCGGCCGTCGAGCTCCACCCTCCCAAATCCACGCCCCGGCGTTCCCTCTCCACACCCTA
CCGCTAGTCGCCAGATCCTCCAATCCCAAGCTCCAGCGGCAGCCGTGCTTCGGGCGACAC
CACCGGACGGCGCCGAGAAGGAACAGATATAGGTAGAGTTCTTTCCTCTCGCCAGTCTTC
CATCTTAATCCAATCCCGCCCCCAGCATGTCAGAGCTCTGCAAGATCCCTGCTGCCATGG
TAGCCGAATCTGTGGAGAGATCTTATGTGCTCAAGATAGATGGATACTCAAGAGTGAAGG
GGCTACTCAAGAATGGCCAGTTCGCCACCTCCACCCCTTTCAGTGTTGGAGGCCACGACT
GGACCGTCAAATATTACCCCAACGGCTGCCCCAAGAATTGCGACGATTTCATATCTCTGT
ATGTACGCCATGAATCGGCCGATGCCAAACAAGCCAAGGCGAAACTGACGCTCAATGTGC
TTGACAAGAATGGTGATCCGGTGCCTTCGTACACCCGTACCGCCCCTGTGCACACCTTCT
CAAGGAAAGCTCCAACCTGTGGCTACTATGATTTCATCCTCAAGGCTGAGCTTGAGGGAT
CGGCGCATCTTANAGGCGATTGTCTCACCATCAGGTGCGATGTCACCGTTATGAAGGACA
TCGAAGAAGCAATGGTTCCTCCAAGCGACCTGCACCGGCATCTCGGCGATCTCCTGAAGA
GCAATGA

Homology of Contig U35_8764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g23737.1	361	3e-52
Arabidopsis v10	None