barSeed - Barley Seed Development Database

Probe ABC20254

Source Contig ABC20254

barSeed

Links

Affymetrix Source Sequence (862 bp)

>ABC20254 862
CAAATCTATTTCCAGGATTTTCAAGTGACCAGAGTAAAAGCAAGGTGGAGAAGATCAAGT
CTTCCGTGGTACTGCCTTTCCATCATTTCTCAGGTGGTGCAAATCCTGCAGCAACTAGCC
TTCCAGTAGCAAAATCGGTGGAACCTGAAGCGGAAATCATGTGCGATGATCCTGCTTCTC
AGATGGAGGAAGTGATCCAGCTGGACACTGGAACAGATGACCCAGAAAACGGCAACGCAG
ATGGACAGAGCGAGTGCAAACCTGGAGACACTGATGTGTCTAGCTCCCCTCCTGAGCTTT
CCTCTGGCATCGAGCAGCGCTTCAGACCCCTCAACGAGAGCAGAGACCTTCAACAGAAGC
ACCAAGCACCGGAAGAACCAGAATTTAACGACCAGCTTAAGGCCTTTGATTATGCTGAAG
CTAGAAAGAATACTTCATTTGGAGAGGTTAGATCTGAGAGAAGAAAGGACAATGCAGTGG
CCAGGGCAATCAATGCGGATTCTGGAGATAAACGTAGAAGTTCGAAACAAATCCCGGGTG
GCGGCGAAGAGGATGAGGGGAATTTCCAGAATCCACGAAGGCGACAGGCTTTCCCACCTT
CGGGCAACAGGAGTGCCACGTACCATTAGTTAGTGGAGAGATGTACTACCGGACCGAGGC
ATTGTATGTAACCTAAAGAGTACAGGTTGAAGTGGAACAGCGCGCATGATTTGGCATTTC
TCGGCAAGTCATTGGAAATGCTGTTCTGTGAGATACTATGGACGCCTGTTTGACGGCCAA
CACAAAATGGATCGGCTCCAACCTTATTCTGGTTGTTTGAGTGATACAAACAAAAATCTG
CTTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_55357.1	1927	0.0	8 - 861	99	848 / 855	CUST_24045_PI390587928	ABC20254 ABC36800
AK365664	2980	0.0	2137 - 2980	99	839 / 844	CUST_24045_PI390587928 CUST_2633_PI390587928	ABC20254 ABC36800
MLOC_55357.2	1082	0.0	5 - 829	99	819 / 826	None	ABC20254
MLOC_55357.4	1831	0.0	1 - 683	100	683 / 683	CUST_24045_PI390587928	ABC20254 ABC36800
MLOC_55357.3	775	2e-55	592 - 709	100	118 / 118	None	ABC20254