- Probe CUST_2633_PI390587928
- Source Contig U35_27089
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_2633_PI390587928 | Hv_44K_v2 | TTCCAGGTTGTTTACGGCAAGAAGAAGAAGAAGATGGGTATGGGAGAGGAAGGAGTTGGC | 475 | GeneList: brown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 5.216 | 6.564 | 1.013 | 0.645 | 0.381 | 0.386 |
Raw | 347.707 | 606.924 | 85.486 | 76.121 | 16.604 | 20.336 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK365664 | 2980 | 2e-24 | 483 - 542 | 100 | 60 / 60 | plus | ABC20254 ABC36800 |
MLOC | MLOC_55358.2 | 958 | 2e-24 | 374 - 433 | 100 | 60 / 60 | minus | None |
JLOC1 | JLOC1_35698.1 | 2928 | 8e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
Harvest21 | ABC26082 | 537 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus | |
Harvest35 | U35_27089 | 537 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus |
Contig Sequence (537 bp)
>U35_27089 537 Hv_44K_v2 GTACGAGGGCTAGCACCACTTTCCCACCCAACTCGCCATGGAAGCGGACGAGGCCCCTCA CCCGCCGCCGCCGTGGAAGCAGAACAAGTCGGCCGTGGCCATCGAGGCCTCGTCGGGGCC CCTCGCCTCCGCCGCCGCGCGCCTGTCGGCCCGCTCCCGCGCGATCCCTCCCGCCCGTGA CTTCCATTTCTACAACAACTTCCCCTCCTTCAAGTCCCCCGTCGCCGCCGCCGCCGCCAG GGCCGAATCCTCCCTAGGTGTCCTCGCGGCCTCCACGCTCCTCCCCAAACAGCAGCAGCA GCAGCAGCCGCCTTTCCCCACGGAGGATCTCGACGACGCCTACGACTGGCTTGTCTCCCG CAATGACGACCTGCTCGAGATGTTCGCCGCCTCCGCGGACGAGTTCAAGTCGCTGCGGGA GAAGGAGGAGGCCCAAGGCCGGAAGGTCGCGGCAGAAGAGATGGCTGGGGACGGGTTCCA GGTTGTTTACGGCAAGAAGAAGAAGAAGATGGGTATGGGAGAGGAAGGAGTTGGCAG
Homology of Contig U35_27089 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi3g27252.1 | 907 | 3e-51 | |
Arabidopsis v10 | None |