barSeed - Barley Seed Development Database

Probe ABC19426

Source Contig ABC19426

barSeed

Links

Affymetrix Source Sequence (1833 bp)

>ABC19426 1833
GTGTGTGACGAGAGGCTTGTCTCCACCACGACGAGAGACATGAAGCCCACCACAGCCACT
GCTGCTCTCGTGCTAGCACTGACACTGGCACACCATGCCTCCATTGCCGCCGCCGCCGGC
CCCAGGGTCATCATCGTCGGCGCCGGCATGTCCGGGATCTCGGCGGGGAAGCGGCTATCG
GAGGCCGGGATAACGGACCTGGTGATCCTGGAGGCGACGGACCACGTCGGCGGGAGGATG
CACAAGCAGAGCTTCGGCGGCATCAACGTGGAGGTCGGCGCCAACTGGGTGGAGGGCGTC
AACGGCGCCGGCAGGATGAACCCCATCTGGCCCCTCGTCAACTCCACCCTCAAGCTCAAG
AACTTCCGCTCCGACTTCGACGGCCTCGCCGACAACGTCTACAAGGAGAATGGCGGCGTC
TACGAGAGAGCGTACGTGCAGAAGAGGCTCGACCGGTGGGGCGAGGTGGAAGAGGGCGGC
GAGAAGCTGTCCGCCAAGCTGCGCCCCAGCGGGCAGGACGACATGTCCATCCTCGCCATG
CAACGCCTCAACGACCACTTGCCCAACGGGCCGACGTCGCCGGTGGACATGGTTCTGGAC
TACTTCAAGCACGACTACGAGTTCGCGGAGCCGCCGCGCGTCACCAGCCTGCAGAACGTG
GTCCCTCTCGCCACCTTCACCGACTTCGGCGACGACGTCTACTTCGTCGCCGACCAGCGC
GGCTACGAGGCCGTCGTGTACTACCTCGCCGGCCAGTACCTCAAGGCCGACAAGTCCGGC
AACATCGTCGACCCCCGCCTCCAGCTCAACAAGGTGGTGACGGAGATCTCCCACTCTGGT
GGCGGCGTCACCGTGAGGACGGAGGACGCCAAGGTGTACAAGGCAGACTACGTCATGGTC
TCCACCAGCGTCGGGGTCCTGCAATCCGACCTCATACAGTTCAAGCCACGGCTTCCTACG
TGGAAGGTTCTCTCGATCTACCAGTTCGACATGGCCGTGTACACCAAGATCTTCGTCAAG
TTCCCCCGCAAGTTCTGGCCCCAAGGGAAAGGGAGGGAGTTCTTCCTCTACGCGAGCAGC
AGGAGAGGCTACTACGGAGTGTGGCAGGAGTTTGAGGCGCAGTACCCAGACGCCAACGTT
CTCCTGGTCACCGTCACCGACGACGAGTCGAGGCGGATCGAGCAGCAGTCGGACAACCAG
ACCAAGGCGGAGATCGTGGAGGTGCTGAGGAGCATGTTCCCCGGCGAGGACGTCCCCGAC
GCGACGGACATCCTAGTGCCACGGTGGTGGTCCGACAGGTTCTACAGGGGCACCTTCTCC
AACTGGCCCATCGGCGTCAACCGCTACGAATACGACCAGCTCAGGGCACCGGTCGGGAGG
GTTTACTTCACCGGGGAGCACACCAGCGAGCACTACAACGGTTATGTCCATGGAGCTTAT
CTTTCAGGTATTGACTCTGCAGACATTCTGATCAAGTGTGCTCAGAAGAGAATGTGCAAA
TACCACATCCCGGGCAAGTTCGACTAGAGAATTAAGAGGCTAAGCATCGTAAGCATATGG
TGTCTGTTCCAAAGGAATTGAACGGATCGACGTCAGTTATGTGATGGCAGAGTACACACG
TCTGCATCTATTCGTAAGTTAGCTAGAGCAGCCTCTCCGGATAGTGTCATGTGTCTGTCA
CCACGCCATCTGTTTGTGTTCAATTAATTGTTCAGATTGTAAACTCTTCTGAAGATTGCC
ACTTGTGTCTTGTTATTGGTGGGATACTCAAGTTCTTAAGTTGAATAAAATCTTCTCTGA
ATCATGCATTCGTGATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252827.1	1825	0.0	6 - 1815	99	1803 / 1810	CUST_3391_PI390587928	ABC03212 ABC03213 ABC06513 ABC19426
MLOC_73460.1	1029	0.0	183 - 1029	100	847 / 847	None	ABC19426
MLOC_73460.2	807	0.0	1 - 780	100	780 / 780	None	ABC19426
MLOC_38658.1	1843	0.0	188 - 1575	81	1136 / 1398	None	ABC03212 ABC03213 ABC06513 ABC19426
MLOC_58753.1	1827	0.0	255 - 1678	81	1152 / 1430	None	ABC03212 ABC06513 ABC06514 ABC19426
MLOC_78452.1	2007	0.0	347 - 1760	80	1144 / 1424	CUST_37411_PI390587928 CUST_21760_PI390587928 CUST_37412_PI390587928	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
MLOC_78452.2	1911	0.0	275 - 1688	80	1144 / 1424	CUST_37411_PI390587928 CUST_21760_PI390587928 CUST_37412_PI390587928	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
MLOC_58753.2	1345	0.0	59 - 1336	80	1026 / 1284	None	ABC03212 ABC06513 ABC19426
MLOC_46189.1	716	2e-143	1 - 286	99	283 / 286	None	ABC03212 ABC03213 ABC19426
MLOC_45621.1	402	1e-165	1 - 317	100	317 / 317	None	ABC19426
MLOC_14024.1	228	3e-96	4 - 228	95	214 / 225	None	ABC03212 ABC19426
MLOC_38658.2	1781	1e-89	1098 - 1441	84	291 / 345	None	ABC03212 ABC03213 ABC19426