barSeed - Barley Seed Development Database

Probe CUST_3391_PI390587928

Source Contig U35_23847

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3391_PI390587928	Hv_44K_v2	ATTGGTGGGATACTCAAGTTCTTAAGTTGAATAAAATCTTCTCTGAATCATGCATTCGTG	1754	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.463	7.179	1.842	0.818	0.651	0.556
Raw	83.139	127.761	28.609	19.965	4.049	3.260

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252827.1	1825	3e-22	1760 - 1815	100	56 / 56	plus	ABC03212 ABC03213 ABC06513 ABC19426
JLOC1	JLOC1_29614.1	367	5e-22	313 - 367	100	55 / 55	plus
Harvest21	ABC19426	1833	3e-25	1755 - 1814	100	60 / 60	plus	ABC19426
Harvest35	U35_23847	1833	3e-25	1755 - 1814	100	60 / 60	plus

Contig Sequence (1833 bp)

>U35_23847 1833 Hv_44K_v2
GTGTGTGACGAGAGGCTTGTCTCCACCACGACGAGAGACATGAAGCCCACCACAGCCACT
GCTGCTCTCGTGCTAGCACTGACACTGGCACACCATGCCTCCATTGCCGCCGCCGCCGGC
CCCAGGGTCATCATCGTCGGCGCCGGCATGTCCGGGATCTCGGCGGGGAAGCGGCTATCG
GAGGCCGGGATAACGGACCTGGTGATCCTGGAGGCGACGGACCACGTCGGCGGGAGGATG
CACAAGCAGAGCTTCGGCGGCATCAACGTGGAGGTCGGCGCCAACTGGGTGGAGGGCGTC
AACGGCGCCGGCAGGATGAACCCCATCTGGCCCCTCGTCAACTCCACCCTCAAGCTCAAG
AACTTCCGCTCCGACTTCGACGGCCTCGCCGACAACGTCTACAAGGAGAATGGCGGCGTC
TACGAGAGAGCGTACGTGCAGAAGAGGCTCGACCGGTGGGGCGAGGTGGAAGAGGGCGGC
GAGAAGCTGTCCGCCAAGCTGCGCCCCAGCGGGCAGGACGACATGTCCATCCTCGCCATG
CAACGCCTCAACGACCACTTGCCCAACGGGCCGACGTCGCCGGTGGACATGGTTCTGGAC
TACTTCAAGCACGACTACGAGTTCGCGGAGCCGCCGCGCGTCACCAGCCTGCAGAACGTG
GTCCCTCTCGCCACCTTCACCGACTTCGGCGACGACGTCTACTTCGTCGCCGACCAGCGC
GGCTACGAGGCCGTCGTGTACTACCTCGCCGGCCAGTACCTCAAGGCCGACAAGTCCGGC
AACATCGTCGACCCCCGCCTCCAGCTCAACAAGGTGGTGACGGAGATCTCCCACTCTGGT
GGCGGCGTCACCGTGAGGACGGAGGACGCCAAGGTGTACAAGGCAGACTACGTCATGGTC
TCCACCAGCGTCGGGGTCCTGCAATCCGACCTCATACAGTTCAAGCCACGGCTTCCTACG
TGGAAGGTTCTCTCGATCTACCAGTTCGACATGGCCGTGTACACCAAGATCTTCGTCAAG
TTCCCCCGCAAGTTCTGGCCCCAAGGGAAAGGGAGGGAGTTCTTCCTCTACGCGAGCAGC
AGGAGAGGCTACTACGGAGTGTGGCAGGAGTTTGAGGCGCAGTACCCAGACGCCAACGTT
CTCCTGGTCACCGTCACCGACGACGAGTCGAGGCGGATCGAGCAGCAGTCGGACAACCAG
ACCAAGGCGGAGATCGTGGAGGTGCTGAGGAGCATGTTCCCCGGCGAGGACGTCCCCGAC
GCGACGGACATCCTAGTGCCACGGTGGTGGTCCGACAGGTTCTACAGGGGCACCTTCTCC
AACTGGCCCATCGGCGTCAACCGCTACGAATACGACCAGCTCAGGGCACCGGTCGGGAGG
GTTTACTTCACCGGGGAGCACACCAGCGAGCACTACAACGGTTATGTCCATGGAGCTTAT
CTTTCAGGTATTGACTCTGCAGACATTCTGATCAAGTGTGCTCAGAAGAGAATGTGCAAA
TACCACATCCCGGGCAAGTTCGACTAGAGAATTAAGAGGCTAAGCATCGTAAGCATATGG
TGTCTGTTCCAAAGGAATTGAACGGATCGACGTCAGTTATGTGATGGCAGAGTACACACG
TCTGCATCTATTCGTAAGTTAGCTAGAGCAGCCTCTCCGGATAGTGTCATGTGTCTGTCA
CCACGCCATCTGTTTGTGTTCAATTAATTGTTCAGATTGTAAACTCTTCTGAAGATTGCC
ACTTGTGTCTTGTTATTGGTGGGATACTCAAGTTCTTAAGTTGAATAAAATCTTCTCTGA
ATCATGCATTCGTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_23847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20284.1	479	0.0	protein\|amine oxidase, flavin-containing, domain containing protein, expressed
Brachypodium v1_2	Bradi3g25580.1	496	0.0
Arabidopsis v10	AT5G13700.1	472	4e-139	\| Symbols: ATPAO1, APAO, PAO1 \| polyamine oxidase 1 \| chr5:4420222-4422974 REVERSE LENGTH=472