barSeed - Barley Seed Development Database

Probe ABC19394

Source Contig ABC19394

barSeed

Links

Affymetrix Source Sequence (1535 bp)

>ABC19394 1535
AGAGAGAGATCGATTTTCAAATCCAAGATGGCCACATTGTGCCTTTGGTGTATGGTTCAC
AAGGTGATTGGGATAGTAGCTTGAAGATAATACTTGATTGGTCCCCCTTTTCTTCAATGG
AAGAACTGCTACAGCAGTTCAAGGATATTGAGAGCCATGGAACTAAGGTGGTGATATATG
ATCTATGGATGAATGATGATGGCCTTTTAGAACTTGACTTCGATGATGACGATGAGGACA
TATTACTTAGAGATCAAGCTAAAGCTACTGCGGGGACGACAAAGATCCAAAAAGAAATTA
TTGAGCAACATATATCCCACAGACTCAGATTCTCTTTGCGCGCGTATACTTCCATCCTTT
ATCTTAAGAAATATGCGAACTTCCAAATTATATTAAGGGGAAAAGTGGTTGAACATATAA
GTGTTGCCCATGATCTGAAGTTTAAGAAAGTATTTACTTACAAGCCTCAAGTTACGCATG
ATTCTCAAGTGGTCTCAGTGAAGGTAGATGTTGGATTTGCCAAGGAGGCACCAGTTTTGG
GCATTTTTGGGATGAATGTCTACCATAAAAATCGACTAATAATGCCCTTCTGGAAGGTTC
TTCAGGAAGGATCTAGCAGAGGGAGGAGTGTTGTAGGTGTACTTGAGGCAAATTTTATTG
AACCGGCACATGACAAACAGGATTTTGAGAGGACTCCACTATTCATTCGTCTGGAAACTA
AACTTAGACAAATTATCATTGAGTACTGGAAAAACAACTGTCATTTGATAGGTTACCAGC
CAATGAATCCACAATTAAAAACACAGTATAAAGCTGCCAAAGCTCCAGGTGGTCCTGGAC
ATCAGTTTCAGAAGAAATCGTCTACTGCTCAGAGGATTGGAGCACATTCATCAAATTTGC
TACCGGAAACATATGATGACACAGCAGTCTTTGGATTGTCAGCTAATGGTGCAGGTTCTG
GTTTGCAATTTTCTGGCCGAGCACAAGAAAAAAGTACAAATTCAGCAGGCTTGGAAGAGG
ATCTAGTCAATATTGCCTCTGATGGTGAACTTGATCCGAATGTCATTGAGAAGCTGAGTG
ATGAAAACATTTCTCTGTTCACAAGGCGTGAGGAGCTTAAACAACGAGATACACAATTGA
AGCAGACGATTTTGGAGTTGGAGCATGAACTAGAGGAAACAAAAAGGAAATGCTCTCAGC
TTTCTACTGAGCTGCAGGTGCGGAAGAGCCAGCAGCAGCTCCCATACATGTGAAGGTTAT
TTCATTAAGGATGCAGAGCAGTGACCAAGGCCAATGAAGAAACCACGGCGTGAAGTGTTG
ACGTTGTTCATATTCTTGCTAATGCTAAACTGGGGCCACGCTTAGGAACCTTATGTAGTA
AACTAACTGTGCGTACCAACAGCATATGGTTATCAGATGTGTATATATCATGATGTCTGG
TTGCAACTGCTGTTCCGGGCATGGGTATCAAAGATGATTGAATAATCAAAAACTAATCTA
GTTAGTCGTATTATCAGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK376454	2168	0.0	665 - 2168	99	1502 / 1509	CUST_37461_PI390587928	ABC12604 ABC19394
AK361122	2550	0.0	621 - 1873	83	1048 / 1262	CUST_29637_PI390587928 CUST_36472_PI390587928	ABC12604 ABC19394 ABC49863
AK364522	2488	2e-63	1601 - 1909	81	255 / 314	CUST_29637_PI390587928 CUST_36472_PI390587928	ABC12604 ABC19394 ABC49863
MLOC_16556.1	415	0.0	63 - 412	100	350 / 350	None	ABC19394
MLOC_43580.1	646	3e-160	71 - 377	100	307 / 307	None	ABC12604 ABC19394
MLOC_43580.2	1431	4e-159	4 - 308	100	305 / 305	None	ABC12604 ABC19255 ABC19394
MLOC_43580.3	388	4e-159	3 - 311	99	308 / 309	None	ABC12604 ABC19394
MLOC_10033.1	1433	3e-145	464 - 1142	81	555 / 688	CUST_36472_PI390587928	ABC12604 ABC19394 ABC49863
MLOC_66134.1	2683	4e-134	693 - 958	99	265 / 267	None	ABC15957 ABC19394
MLOC_66134.2	2686	4e-134	693 - 958	99	265 / 267	None	ABC15957 ABC19394
MLOC_37127.2	742	3e-116	513 - 740	100	228 / 228	CUST_37461_PI390587928	ABC19394
MLOC_37127.3	752	3e-116	523 - 750	100	228 / 228	CUST_37461_PI390587928	ABC19394
MLOC_37127.1	1067	3e-116	835 - 1062	100	228 / 228	CUST_37461_PI390587928	ABC19394
MLOC_28393.2	633	9e-106	4 - 212	100	209 / 209	None	ABC19394
MLOC_28393.1	359	1e-104	153 - 359	100	207 / 207	None	ABC19394
MLOC_39912.1	484	8e-82	317 - 482	100	166 / 166	None	ABC19394
MLOC_10033.2	1463	2e-63	457 - 765	81	255 / 314	CUST_36472_PI390587928	ABC12604 ABC19394 ABC49863