barSeed - Barley Seed Development Database

Probe CUST_37461_PI390587928

Source Contig U35_9833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37461_PI390587928	Hv_44K_v2	CCTGAAGGTGTACGGCAATGCATAAGTTTAGGATTCTCAACCAAGAAATCAAAGACAACC	410	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.546	1.355	1.111	0.809	0.649	0.672
Raw	109.149	126.320	107.892	105.632	33.780	39.499

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376454	2168	2e-24	439 - 498	100	60 / 60	plus	ABC12604 ABC19394
MLOC	MLOC_37127.2	742	2e-24	287 - 346	100	60 / 60	plus	ABC19394
MLOC	MLOC_37127.3	752	2e-24	297 - 356	100	60 / 60	plus	ABC19394
MLOC	MLOC_37127.1	1067	2e-24	609 - 668	100	60 / 60	plus	ABC19394
JLOC1	JLOC1_24004.2	746	8e-25	287 - 346	100	60 / 60	plus
JLOC1	JLOC1_24004.1	1015	8e-25	556 - 615	100	60 / 60	plus
Harvest21	ABC21307	652	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_9833	653	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_9833 653 Hv_44K_v2
GCTGGGCGGCGGACTCATCGGCGAAACCTCCCCGGCGAACCGACCTAAACCCTAACCTTC
CAATGCCAGCGGCAATGGCCGGCGGCGATGGCGGCATGGGCAGTGGCCCTCGATCCCTCG
ATTGCCGTAGCTTCTGGAAGGCCGGCGCGTTCGAGGCCCCCTCCGCCGCCGCCCGCGAGT
TCTACGACGTGCTGGAGACAGGGGACTTCGACCGCGCGCGGGTGCACCCGAAGTTCCTGC
ACACCAACGCGACCTCCCACAAGTGGGCGTTCGGAGCTATAGCTGAACTTCTTGACAATG
CAGTTGATGAGATTTGCAATGGAGCCACATTCATAAAAGTGGATAAAAGCATCAATTTAA
AAGACAGTAGCCCAATGCTGGTTTTCCAAGACGATGGAGGAGGAATGGATCCTGAAGGTG
TACGGCAATGCATAAGTTTAGGATTCTCAACCAAGAAATCAAAGACAACCATTGGCCAGT
ATGGAAATGGCTTTAAGACAAGCACAATGAGACTTGGTGCTGATGCAATTGTTTTTACTC
GTGCAATCCGTGGGAGTAATGTTACCTTGAGTGTTGGCTTGCTCTCATACACTTTCTTGA
GGAGAACAATGAAGGATGACATAGTTGTCCCTGTGCTCGATTTTCAAATCCAA

Homology of Contig U35_9833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g10190.1	610	3e-110	protein\|ATP-binding region, ATPase-like domain containing protein, expressed
Brachypodium v1_2	Bradi3g22750.2	603	1e-111
Arabidopsis v10	AT4G36290.1	635	1e-77	\| Symbols: CRT1 \| compromised recognition of TCV 1 \| chr4:17169669-17173187 REVERSE LENGTH=635