barSeed - Barley Seed Development Database

Probe ABC18690

Source Contig ABC18690

barSeed

Links

Affymetrix Source Sequence (724 bp)

>ABC18690 724
CGCCGGCAGAGAGCGGTCGCCGCGCTGCTGCTGGCGGCGGCGCTGGCCGCGTGCGCGGCG
ACGCCAGCGACGGCGGAGCACAAGATCTACATCAACTGGTTGTCCCACAACAACTACTCT
GACTGGGCCAGGAGCCACGGGCCCTTCTACAAGGGAGACTATCTCGTGTTCTACACGCCG
GAGAAGCTGGACGTGGTGGAGGTGAACGAGCGCGGGTTCGACAGGTGCGACCCTAGAAAC
CCCATCTACCGCTTCTCCGGCGGCCGTGAGATCGCCATCCTGCTCAGCGAGGCCAAGGTC
TACTACTTCATCTGCAGCGTCGGCGGGTACTGCCCCGACGGGATGCGCCTCGCCATCGAG
GTCCATGACATGCCGCGGACGCCGGCCTCTGCACTCGACGACACATTCGGCGCCGCGGTG
GTGGAGAGCAGAGATACCTCACCGGCGCCTGGACCCCGAGCGAGCTCGGAGGGTGAGAGC
GAGGGGCAGGCACGAGGAAGCTACGACTCTGTTCGTTTGCTCGGGAGAATGTCAAAAATT
AGGAGACATGGTGTCAAACTCTGGTCTAGGACGGCGCCACAAGCGCGCTGGGCTGCGGCC
CGGCCCGTAAATTAGGAGTTCGTTGAGAAGATACTCATATGACCAAAATCAAATGTCTTC
TCAAATAATTAGATCAAATGAAAATAAGAGTACAAATATCCAAGTGCAAAAAAAAAAAAA
AAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11185.2	706	0.0	8 - 705	99	696 / 698	CUST_38955_PI390587928	ABC18690
MLOC_11185.1	787	4e-82	621 - 786	100	166 / 166	CUST_38955_PI390587928	ABC18690
AK373420	811	0.0	90 - 792	85	611 / 716	None	ABC18690
MLOC_5240.2	458	5e-160	24 - 454	90	390 / 431	None	ABC18690
MLOC_5240.1	798	7e-134	334 - 731	88	353 / 399	None	ABC18690