barSeed - Barley Seed Development Database

Probe CUST_38955_PI390587928

Source Contig U35_24339

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38955_PI390587928	Hv_44K_v2	CCGTAAATTAGGAGTTCGTTGAGAAGATACTCATATGACCAAAATCAAATGTCTTCTCAA	604	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.164	0.118	0.906	2.981	2.124	3.026
Raw	4.681	4.131	46.905	205.174	63.137	94.628

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11185.1	787	7e-23	41 - 101	98	60 / 61	minus	ABC18690
MLOC	MLOC_11185.2	706	7e-23	41 - 101	98	60 / 61	minus	ABC18690
JLOC1	JLOC1_7391.1	1169	4e-23	575 - 635	98	60 / 61	plus
Harvest21	ABC18690	724	3e-25	605 - 664	100	60 / 60	plus	ABC18690
Harvest35	U35_24339	724	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_24339 724 Hv_44K_v2
CGCCGGCAGAGAGCGGTCGCCGCGCTGCTGCTGGCGGCGGCGCTGGCCGCGTGCGCGGCG
ACGCCAGCGACGGCGGAGCACAAGATCTACATCAACTGGTTGTCCCACAACAACTACTCT
GACTGGGCCAGGAGCCACGGGCCCTTCTACAAGGGAGACTATCTCGTGTTCTACACGCCG
GAGAAGCTGGACGTGGTGGAGGTGAACGAGCGCGGGTTCGACAGGTGCGACCCTAGAAAC
CCCATCTACCGCTTCTCCGGCGGCCGTGAGATCGCCATCCTGCTCAGCGAGGCCAAGGTC
TACTACTTCATCTGCAGCGTCGGCGGGTACTGCCCCGACGGGATGCGCCTCGCCATCGAG
GTCCATGACATGCCGCGGACGCCGGCCTCTGCACTCGACGACACATTCGGCGCCGCGGTG
GTGGAGAGCAGAGATACCTCACCGGCGCCTGGACCCCGAGCGAGCTCGGAGGGTGAGAGC
GAGGGGCAGGCACGAGGAAGCTACGACTCTGTTCGTTTGCTCGGGAGAATGTCAAAAATT
AGGAGACATGGTGTCAAACTCTGGTCTAGGACGGCGCCACAAGCGCGCTGGGCTGCGGCC
CGGCCCGTAAATTAGGAGTTCGTTGAGAAGATACTCATATGACCAAAATCAAATGTCTTC
TCAAATAATTAGATCAAATGAAAATAAGAGTACAAATATCCAAGTGCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_24339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None