barSeed - Barley Seed Development Database

Probe ABC18104

Source Contig ABC18104

barSeed

Links

Affymetrix Source Sequence (666 bp)

>ABC18104 666
AAAAGCAAAGAAGAGGTTGACAAAGTTATTGACAGATGTGTTGGTGCTGGGGATTTGCGG
GAGGATATTCTGCAATACAGGAAGGCATTGCGAGATTGTTCACATGATGATGATGATGAC
GAGGCACGGTCATATCTCATGGATATGGGGACTAAAGCTTTGAGGCGTTACTTCTTTCTG
ATAACATTTAGGTCCTACGTCCATTGTACATCCTTGCATGAAGTAACATTTGCATCATGG
ATGGAGGCTAGGCCCGAACTAGGCCACCTCTGCGATAACTTAAAGCTGGATAGATAGAAT
ATACCTTGGTCATTATTGTGGAAGTCGTGGGACTGGTGGACCGTGGACTCACCGTGTATG
CACTAGAGAAGGTGGTACGGAAAGAGATGAATAAGGAGGATACATGATCTCGAAGGAGTA
TGTAATGGCTGAAAGAGGGACATTGTATTGAACTTGCTTCTGCTAATTAATAGAGGCAAG
CATGCATATACATTCAAGCTTGTAAGTTGGAGTAGGACAGTAAAGTTGAACTTTCCGATC
TACATGTTTTCCACTGCTTGCAAATTATAGTGTACTAGCTCATTTAGATGCATGGCCTTC
TTGTCCTCAACAAATCTGGATTTTAGGAGCTCTTCCTGTACTTTTTAATATGCTCCCTGG
CAATAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364088	4403	0.0	3657 - 4244	100	588 / 588	CUST_31939_PI390587928	ABC07692 ABC07693 ABC18104
MLOC_37909.1	1227	0.0	212 - 729	99	514 / 518	CUST_36130_PI390587928	ABC18104
MLOC_37909.3	397	6e-179	1 - 340	100	340 / 340	None	ABC18104
MLOC_37909.2	475	5e-165	122 - 449	99	324 / 328	None	ABC18104
MLOC_38238.2	928	1e-81	764 - 928	100	165 / 165	None	ABC18104
MLOC_38238.1	976	1e-81	766 - 930	100	165 / 165	None	ABC18104
MLOC_38238.3	1176	4e-81	764 - 927	100	164 / 164	None	ABC18104