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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31939_PI390587928Hv_44K_v2GTGGGAGTCAGTGATATCCGATACAGTTAAGACTCCACTTGAGGTCTATGAGGAGTTACA484GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4510.5001.3481.4431.0301.052
Raw 11.13218.93346.44968.15618.99621.443



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36408844032e-24668 - 72710060 / 60plus ABC07692 ABC07693 ABC18104
MLOCMLOC_6573.19022e-24639 - 69810060 / 60minus None
JLOC1JLOC1_4291.19228e-25206 - 26510060 / 60plus
Harvest21ABC277275443e-25485 - 54410060 / 60plus
Harvest35U35_287105443e-25485 - 54410060 / 60plus



Contig Sequence (544 bp)

>U35_28710 544 Hv_44K_v2
TGGACGACGTGCTGGCGGTGGGAGAGCAGGTCATCAGCAGCAGGGGCGGCTCCGTGCTCG
GGAAGAAGACCATCCTCAAGAGTGACCACTTCCCCGGCTGCCAGAACAAGCGCCTCACCC
CGCACATCGACGGCGCGCCCAATTACCGGCAGGCAGGATCACTGCGTGTTCACGGTGTTG
CAATGCCGACAATGGAAGGAATTGTGAATGTGCTAAATCATATTGGGGCACAGAAGAAGG
GAAAGCAGACCCAAGTTCTATGGCATAGTCTTCGGGAGGAACCAGTCATCTATATCAATG
GCCGCCCTTTTGTTCTACGAGATGCCGAAAGACCCTTCTCAAACCTTGAATATACGGGAA
TCAACCGGGAGAGAGTGGAGCAGATGGAGTTTCGTTTGAAAGAAGATATTCTTCAGGAAG
CTTCAAGATATGGGAATAAGATTCTAGTTACTGATGAGCTGCCGAATGGTCAGATGGTGG
ACCAGTGGGAGTCAGTGATATCCGATACAGTTAAGACTCCACTTGAGGTCTATGAGGAGT
TACA



Homology of Contig U35_28710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g38970.112578e-109protein|metal ion binding protein, putative, expressed
Brachypodium v1_2Bradi1g15377.112578e-115
Arabidopsis v10AT3G62010.112549e-90unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | chr3:22964945-22971149 FORWARD LENGTH=1254