barSeed - Barley Seed Development Database

Probe ABC17523

Source Contig ABC17523

barSeed

Links

Affymetrix Source Sequence (562 bp)

>ABC17523 562
GCCTGAGTCCTGACCTGGTGGCGGTGGCGGTGGCGGCGGAGGCTGGAGGCGACTGGCAGG
AGTGCCCGGTGAAGGAAGCGGTGCACGTGGAAGAGGGAGCGCTGGAGCTGAGGTGGGCTT
TGGACGCGTTTGATGTGGGTCCTTTCGACATGTTCTATGAGGCGCCTTCCTGCGTGTTCT
ATGAGGCGCCTTCCTGCGTGTTCTATACTTGTGCACCCTCTGAATTGAGGACTGACACCA
AGTACAATGCAAGGACTGGCAACAAGTTGTCGCCACTAGTGGTTCGCAACGGCGAACTGT
TTGGTGCCAGAGAGATGAACATGAGTGAGGGCGGGCCTTGGCTGTCCCCGCGGACTGATC
CACCGACTAACGTCAAGTTCTAAGCCACACATGTGGTTTGAATTTGGCTCTAACCTGTTT
GAGAAACAAGATTTTGTATGGTTTGTGTGTACTCCCCTGTACAGTTCTGTTCAGATACAA
AAGTCATACCCAATAAATGTTGCCTCTTCCTGCTGATCGGGGAGGCAAATAAGGTCCGCT
TCTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252733.1	727	0.0	31 - 574	98	538 / 547	CUST_3147_PI390587928	ABC17523
MLOC_69578.1	1202	5e-179	4 - 343	100	340 / 340	CUST_3147_PI390587928	ABC17523
MLOC_69578.2	1933	5e-179	4 - 343	100	340 / 340	CUST_3147_PI390587928	ABC17523
MLOC_69577.1	1005	2e-172	4 - 331	100	328 / 328	None	ABC17523
MLOC_40392.1	551	3e-52	185 - 319	94	130 / 138	None	ABC17523