barSeed - Barley Seed Development Database

Probe CUST_3147_PI390587928

Source Contig U35_22956

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3147_PI390587928	Hv_44K_v2	AATAAATGTTGCCTCTTCCTGCTGATCGGGGAGGCAAATAAGGTCCGCTTCTTCAAAAAA	491	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.449	0.596	0.955	1.564	1.203	1.641
Raw	675.838	1384.932	1974.523	4958.243	1366.531	2033.070

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252733.1	727	9e-22	520 - 574	100	55 / 55	plus	ABC17523
MLOC	MLOC_69578.1	1202	9e-22	289 - 343	100	55 / 55	plus	ABC17523
MLOC	MLOC_69578.2	1933	9e-22	289 - 343	100	55 / 55	plus	ABC17523
Harvest21	ABC17523	562	3e-25	492 - 551	100	60 / 60	plus	ABC17523
Harvest35	U35_22956	562	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_22956 562 Hv_44K_v2
GCCTGAGTCCTGACCTGGTGGCGGTGGCGGTGGCGGCGGAGGCTGGAGGCGACTGGCAGG
AGTGCCCGGTGAAGGAAGCGGTGCACGTGGAAGAGGGAGCGCTGGAGCTGAGGTGGGCTT
TGGACGCGTTTGATGTGGGTCCTTTCGACATGTTCTATGAGGCGCCTTCCTGCGTGTTCT
ATGAGGCGCCTTCCTGCGTGTTCTATACTTGTGCACCCTCTGAATTGAGGACTGACACCA
AGTACAATGCAAGGACTGGCAACAAGTTGTCGCCACTAGTGGTTCGCAACGGCGAACTGT
TTGGTGCCAGAGAGATGAACATGAGTGAGGGCGGGCCTTGGCTGTCCCCGCGGACTGATC
CACCGACTAACGTCAAGTTCTAAGCCACACATGTGGTTTGAATTTGGCTCTAACCTGTTT
GAGAAACAAGATTTTGTATGGTTTGTGTGTACTCCCCTGTACAGTTCTGTTCAGATACAA
AAGTCATACCCAATAAATGTTGCCTCTTCCTGCTGATCGGGGAGGCAAATAAGGTCCGCT
TCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None