barSeed - Barley Seed Development Database

Probe ABC16364

Source Contig ABC16364

barSeed

Links

Affymetrix Source Sequence (1043 bp)

>ABC16364 1043
CTCCCCCCCTTAGTACAATACCTTTCACATCGTCATCCAGTCGTTGGCTAGAGCTTGACC
CTGCTGGCGGCGCTCCTTTGGGCCACCAAACGCGGCGCAGCCGCTCAGAGGAGAAGCCGA
GGTTGTCTCGTTGTCAGCGCCGAGGAGACTGGAGTGAGGAGTGGAGCGCCCAGGTATCTG
GTCACTTACTGACCAAACACTTTGAACAAGAAGCATCTCTACACCAACATGGCATCAAAT
CAGCCAATAAACAAGTCCTCTATTATGGCCATGGCTTGGGGATTATTCCGTGATGGTGCT
GGGGTGCTTTCCAACCTCAATGCTGGCAGGAGATGGCCTGGCTGGCATGAAGCAAGGGGA
TCTAATCATTTGGTATGTTGAGCAGCAGAATGTCCAAGGTGCATATAGTTGTACAGAAGA
GGTGAAGGAAGAAGTGAAGTGCATCATGGCCATCACAGAGGAACGTGGCGAGATGGTGGG
CTCCAAGGCCATGGAGATATTGTTGCCCCTGCAGCTTGAGATGTAATTGGTCCAAATGAA
TAACCACCATTTCGAAGGGACAAGGAAGGGATTGTTGGTGCTCAGGGACGCCGCTCCCAA
CACCTTTAGCCTTGGCCTGATGCCCCAGTTCGCACAGTCAGGAGGTTTTCCGTATCAGCT
TCATTTTGTTCACGGTGTTTTATCAATGATGATGTACTGCTTCAAAATTTGTTCCGGTAC
TCTCCAAATTTATATGACCCAAGAATATGTCCTGGATCAATGTTTTATATTCGGAAGTTC
ATTCTTGTCAACCGGTTGGTCTGAATTCTTCTAGCCTTCCATCCAATTTCTGTGTAAACC
ACTAACGTAGGGTCACTCTGCACCAAGAAGATGGTTGTTCTAGCTAAGGAGAATACACCA
AGAAAGCAACCGAGCAGAATTCAGCAGCATGCCTACAATGACATCTCAGTTTTGAAAATA
TAACTTGAGCAACATCATAAATATTGTGTATCTATTTAATTCATATATACCTGGGATCAT
TTTTCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_31979.1	464	0.0	7 - 464	98	448 / 458	CUST_29301_PI390587928 CUST_1115_PI390587928	ABC16364 ABC38305
MLOC_895.1	270	1e-112	20 - 267	96	239 / 248	CUST_29301_PI390587928	ABC16364 ABC38305
MLOC_14284.1	2054	1e-103	1453 - 1720	92	249 / 270	None	ABC16364
MLOC_14284.21	1475	1e-103	964 - 1231	92	249 / 270	None	ABC16364
MLOC_14284.22	1313	1e-103	98 - 365	92	249 / 270	None	ABC16364
MLOC_14284.10	2838	1e-103	1741 - 2008	92	249 / 270	None	ABC16364
MLOC_1008.1	338	1e-92	145 - 338	98	191 / 194	None	ABC16364 ABC38305
MLOC_35000.1	425	4e-88	1 - 186	98	183 / 186	None	ABC16364 ABC38305
MLOC_46204.1	293	1e-83	1 - 195	95	189 / 198	None	ABC16364
MLOC_49342.1	433	7e-61	235 - 375	97	137 / 141	None	ABC16364
AK363032	1078	4e-53	175 - 306	95	126 / 132	None	ABC16364
MLOC_4873.1	3244	4e-53	50 - 181	95	126 / 132	None	ABC16364