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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_1115_PI390587928Hv_44K_v2CAGCAGCATGCCTACAATGACATCTCAGTTTTGAAAATATAACTTGAGCAACATCATAAA921GeneList: lightcyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0711.0461.6011.4860.4930.491
Raw 121.983182.965252.978376.65943.17246.558



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_31979.14647e-23371 - 4309859 / 60plus ABC16364 ABC38305
JLOC1JLOC1_20934.14634e-23366 - 4259859 / 60plus
Harvest21ABC1636410433e-25922 - 98110060 / 60plusABC16364
Harvest35U35_2116510433e-25922 - 98110060 / 60plus



Contig Sequence (1043 bp)

>U35_21165 1043 Hv_44K_v2
CTCCCCCCCTTAGTACAATACCTTTCACATCGTCATCCAGTCGTTGGCTAGAGCTTGACC
CTGCTGGCGGCGCTCCTTTGGGCCACCAAACGCGGCGCAGCCGCTCAGAGGAGAAGCCGA
GGTTGTCTCGTTGTCAGCGCCGAGGAGACTGGAGTGAGGAGTGGAGCGCCCAGGTATCTG
GTCACTTACTGACCAAACACTTTGAACAAGAAGCATCTCTACACCAACATGGCATCAAAT
CAGCCAATAAACAAGTCCTCTATTATGGCCATGGCTTGGGGATTATTCCGTGATGGTGCT
GGGGTGCTTTCCAACCTCAATGCTGGCAGGAGATGGCCTGGCTGGCATGAAGCAAGGGGA
TCTAATCATTTGGTATGTTGAGCAGCAGAATGTCCAAGGTGCATATAGTTGTACAGAAGA
GGTGAAGGAAGAAGTGAAGTGCATCATGGCCATCACAAAGGAACGTGGCGAGATGGTGGG
CTCCAAGGCCATGGAGATATTGTTGCCCCTGCAGCTTGAGATGTAATTGGTCCAAATGAA
TAACCACCATTTCGAAGGGACAAGGAAGGGATTGTTGGTGCTCAGGGACGCCGCTCCCAA
CACCTTTAGCCTTGGCCTGATGCCCCAGTTCGCACAGTCAGGAGGTTTTCCGTATCAGCT
TCATTTTGTTCACGGTGTTTTATCAATGATGATGTACTGCTTCAAAATTTGTTCCGGTAC
TCTCCAAATTTATATGACCCAAGAATATGTCCTGGATCAATGTTTTATATTCGGAAGTTC
ATTCTTGTCAACCGGTTGGTCTGAATTCTTCTAGCCTTCCATCCAATTTCTGTGTAAACC
ACTAACGTAGGGTCACTCTGCACCAAGAAGATGGTTGTTCTAGCTAAGGAGAATACACCA
AGAAAGCAACCGAGCAGAATTCAGCAGCATGCCTACAATGACATCTCAGTTTTGAAAATA
TAACTTGAGCAACATCATAAATATTGTGTATCTATTTAATTCATATATACCTGGGATCAT
TTTTCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_21165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None