barSeed - Barley Seed Development Database

Probe ABC15416

Source Contig ABC15416

barSeed

Links

Affymetrix Source Sequence (1011 bp)

>ABC15416 1011
TCTCTCCAGTCTCTCTTTTCTCCACCTTTGAGAGTTATCCGGGGTTCTTCGGCCCAATCC
CATGCCTCGCTCGGTGGCGCGGCCGGCTCACGTTGGCTAGGGGGAGGTGCCCAGGATCCT
GCTGTATATAGTAGTAGTAGTTTTAGACTTGCGATGTTGGCGTTTGGCGTTATGCCGGAA
GTTTGGAGATCCTCGTCGGATGCGGGCCGCGTCCGACGACTGCTGGTGGTTTCTCTTCTC
CGTGTGTTGCTCTGGTGGTCGGAGCTGAAGGGGGGAGGGGATTATGTACCAGCCGCTCCA
TAAATAAGGCCGATGGTACCCCCCGCGTCCGACGACTGCTGGTGGTTTCTCTTCTCCGTG
TGTTGCTCTGGTGGTCGGAGCTGAAGGGGGGAGGGGATTATGTACCAGCCGCTCCATAAA
TAAGGCCGATGGTACCCCAGATCTGGAGATGGGGATCCTTTTCTTGCTACTCCCGTCTTG
CCGCCGTGGTGGAGGACGATGGGATGCGGAGAAAAGTGGATCCGCTTCCTGGCGTGCCGT
TGTTGCAGTCTTTTCCTTGTGTTCATCAGCAGGTGTGTTCCTGGCAGAGCTACGGCGCGC
TTCGGTCGTTTGCCGGTCTCCGCCTCCGCCGTGCTTCTTCTGGTCGAATGGCGACCTACT
GGAGCCTCTTCGGCTCCGTTCATTGCTCTCGACGCGTCATAGTGTGAAGGGAGGCAGTCA
AGTGCGAGGCTAGCGTCTGCTGTTGTTTCCTCCGATCTGTTGGCTATAGCACAGCGAAGT
CACCAGCCCAAGTGGTTCATCCCCGATGTCGATGGATTTGGTCTTTGGCTTGCACTGCTT
AGGAGGACTGGATTGCGTTTTACCTTGTTGTTCTGGGTCCTCTTTGCAAAAGCAAGGACT
AGTCTGTAATCTCCTTTTCTTAGAGGGTCCTTGTGTATGGTGTGCTTGTACTGTTTTCAG
AGTTATCTAATGCACTTTCGGGATCTTTCTAAANAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK376116	1040	1e-52	251 - 366	99	115 / 116	CUST_5835_PI390587928	ABC15416
MLOC_45232.1	860	3e-54	745 - 860	100	116 / 116	CUST_5835_PI390587928	ABC15416
MLOC_46000.1	526	1e-118	1 - 232	100	232 / 232	None	ABC15416
MLOC_44293.1	639	1e-68	43 - 220	93	169 / 181	None	ABC15416