barSeed - Barley Seed Development Database

Probe CUST_5835_PI390587928

Source Contig U35_7740

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5835_PI390587928	Hv_44K_v2	TGTATGGTGTGCTTGTACTGTTTTCAGAGTTATCTAATGCACTTTCGGGATCTTTCTAAA	933	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.206	0.459	0.872	1.537	1.052	1.768
Raw	75.707	273.736	449.792	1257.983	292.672	537.241

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376116	1040	2e-23	979 - 1036	100	58 / 58	plus	ABC15416
MLOC	MLOC_45232.1	860	2e-23	191 - 248	100	58 / 58	minus	ABC15416
JLOC1	JLOC1_29367.1	711	1e-23	42 - 99	100	58 / 58	minus
Harvest21	ABC15416	1011	3e-25	934 - 993	100	60 / 60	plus	ABC15416
Harvest35	U35_7740	1011	3e-25	934 - 993	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_7740 1011 Hv_44K_v2
TCTCTCCAGTCTCTCTTTTCTCCACCTTTGAGAGTTATCCGGGGTTCTTCGGCCCAATCC
CATGCCTCGCTCGGTGGCGCGGCCGGCTCACGTTGGCTAGGGGGAGGTGCCCAGGATCCT
GCTGTATATAGTAGTAGTAGTTTTAGACTTGCGATGTTGGCGTTTGGCGTTATGCCGGAA
GTTTGGAGATCCTCGTCGGATGCGGGCCGCGTCCGACGACTGCTGGTGGTTTCTCTTCTC
CGTGTGTTGCTCTGGTGGTCGGAGCTGAAGGGGGGAGGGGATTATGTACCAGCCGCTCCA
TAAATAAGGCCGATGGTACCCCCCGCGTCCGACGACTGCTGGTGGTTTCTCTTCTCCGTG
TGTTGCTCTGGTGGTCGGAGCTGAAGGGGGGAGGGGATTATGTACCAGCCGCTCCATAAA
TAAGGCCGATGGTACCCCAGATCTGGAGATGGGGATCCTTTTCTTGCTACTCCCGTCTTG
CCGCCGTGGTGGAGGACGATGGGATGCGGAGAAAAGTGGATCCGCTTCCTGGCGTGCCGT
TGTTGCAGTCTTTTCCTTGTGTTCATCAGCAGGTGTGTTCCTGGCAGAGCTACGGCGCGC
TTCGGTCGTTTGCCGGTCTCCGCCTCCGCCGTGCTTCTTCTGGTCGAATGGCGACCTACT
GGAGCCTCTTCGGCTCCGTTCATTGCTCTCGACGCGTCATAGTGTGAAGGGAGGCAGTCA
AGTGCGAGGCTAGCGTCTGCTGTTGTTTCCTCCGATCTGTTGGCTATAGCACAGCGAAGT
CACCAGCCCAAGTGGTTCATCCCCGATGTCGATGGATTTGGTCTTTGGCTTGCACTGCTT
AGGAGGACTGGATTGCGTTTTACCTTGTTGTTCTGGGTCCTCTTTGCAAAAGCAAGGACT
AGTCTGTAATCTCCTTTTCTTAGAGGGTCCTTGTGTATGGTGTGCTTGTACTGTTTTCAG
AGTTATCTAATGCACTTTCGGGATCTTTCTAAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_7740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None