barSeed - Barley Seed Development Database

Probe ABC15311

Source Contig ABC15311

barSeed

Links

Affymetrix Source Sequence (1640 bp)

>ABC15311 1640
CTCAGTGGCAGACGCTAGTGCTGTGGGTGCGTGGGCCGCTGCAGCTAGGCTAGGGTTCCG
CTCGCCGAATCCGTCGCCGTGCCGGGATCTGCTGCTGCTTCGGGGCTCGGCGGTTGATCC
GGCGGGCGCGAGATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCAC
GAGCAGCGGGTGGACCGCCACCGCGACCACTCCACCGCCGCCAAGGCCGCGGACGAGCTC
CTCGCCGCCGCCCAGGATATGGCAGATATGAGGAACTGCTATGATAACCTGCTTGCCGTT
GCAGCAGCAATAGCAAACAGTTCATATGAATTCTCTGAAGCACTACAAGAAATGGGTACT
TGTTTACTTAAGAGAGTGACACCAACTAAAGATGGAATTAATGATAAGGTTTTGCTGTTG
CTCGGGAAATCGCAGTTTGAACTTCGGAAACTTGTAGATAGTTATCGTGTTCATGTTCTT
ACTACCATTACCACTCCATCACAGTCCCTACTTAATGAGCTTCAAACTGTAGAGGAAATG
AAGCGCCAGTGTGATGAAAAAAGAGAATTGTTCGAAGTCTTGCTAAATGCACAGAAGGAA
AAGGGGAGATCTAAGAATTCCAAAGGTGATCCTGTTGCGTCAGAGCAGTTGAAACAAGCT
CAGGAAGATTATCAAGAGGAAGCGACTCTTTTTCTTTTTCGGTTGAAGTCATTGAAGCAA
GGACAGTTTCGAAGTCTTTTCACGCAAGCTGCTCGGCACCATGCCGCTCAGTTAAATTTA
TTCAAAAAAGGTGTCAAGTCTCTCGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAG
CAACAACACATCGATCATCAGTTCAGTGCACTTGAAGATGAGGATTACTCTGTTGAAGAT
GAAAATGATGACGATTACAATGACAGTCATGATGGAGAACTTTCTTTTGATTATGGAGAA
AGTAAGGAAACTGCAGAAGCTGGTCATGCTTCCCATAGTCCTACAGAGGAATTTTTTGAT
AGAAACAAAGGAGATTATTCCTCTTTTCCTGGTGAAAGACAAAGACCTGTAAGCCAGTCA
GCTCCACTTTTTCCTGAGAAGAAGCTTGAAACAGCAGAAAGAGTAAAAGAGTTGCGGCGT
TCTGCAACGAGGAAGTTACATACTTACGTTTTGCCTACTCCAAATGATGTTCAAGCCACC
TCTCAGACAATCGCAGGAAATCCTACAAGTGGTTCTCCTATTGAGAGCAAAAGTGTATTC
CATTCATCTCCGCTCAACCCAAGTACACATATGGGAGCTTTAAGAGACAATAAGCTACCA
AGTCCCGCCAGATTATCTAATGCACAGTCTGTGCTGAAAGAAAGCAATACCAATACAGCA
GAAATAAGGACAATGCTCCCAGCTGTTGATCCGGCTTTACCAGGCTATAACAATTTGAAG
GCTTCTTCTGACAACAAAAAAGTGAAGAGGGGGTCCTTTTCTGGTCCGATTCCTCTCCGA
TCAAGGTCAACAGAGAATATTGATGCCGCCGCCGCAAGGCACAGCTCTGCACATCAGCCA
ACAATTCATGTGAGAGTGTCACCCAGTTCCTCCCCGCCACCCATATCCTCACCCAGAATT
AAGGAGCTTCACGAGCTGCC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355067	2364	0.0	32 - 1671	99	1634 / 1640	CUST_20054_PI390587928 CUST_23318_PI390587928	ABC15311 ABC21627
MLOC_54766.1	1725	0.0	569 - 1676	100	1108 / 1108	CUST_20054_PI390587928	ABC15311 ABC21627
MLOC_82115.1	415	0.0	1 - 415	95	395 / 416	None	ABC15311
MLOC_50706.1	603	0.0	1 - 358	99	356 / 358	None	ABC15311
AK365060	1085	5e-178	4 - 351	99	345 / 348	CUST_20054_PI390587928 CUST_23318_PI390587928	ABC15311 ABC21627
AK375996	991	8e-132	32 - 287	100	256 / 256	None	ABC15311
MLOC_50706.3	1163	4e-130	911 - 1163	100	253 / 253	None	ABC15311
MLOC_50706.2	951	2e-63	592 - 724	100	133 / 133	None	ABC15311
MLOC_27800.1	227	2e-98	2 - 209	98	204 / 208	None	ABC15311
MLOC_81964.1	179	5e-79	1 - 179	97	173 / 179	None	ABC15311
MLOC_48871.1	179	5e-74	1 - 179	95	170 / 179	None	ABC15311