barSeed - Barley Seed Development Database

Probe CUST_23318_PI390587928

Source Contig U35_5591

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23318_PI390587928	Hv_44K_v2	CACAGCCTGTTCTCAGGCATCATTTTGATCATCATGAATGGCAAGGGATTCCGGAAAAAA	2277	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.262	1.358	1.073	0.927	0.406	0.414
Raw	71.801	118.426	83.049	107.672	16.981	18.822

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355067	2364	3e-22	2299 - 2354	100	56 / 56	plus	ABC15311 ABC21627
MLOC	AK365060	1085	3e-22	979 - 1034	100	56 / 56	plus	ABC15311 ABC21627
JLOC1	JLOC1_35269.1	2205	1e-22	1980 - 2035	100	56 / 56	plus
Harvest21	ABC21627	504	3e-25	434 - 493	100	60 / 60	plus	ABC21627
Harvest35	U35_5591	2348	3e-25	2278 - 2337	100	60 / 60	plus

Contig Sequence (2348 bp)

>U35_5591 2348 Hv_44K_v2
CTCAGTGGCAGACGCTAGTGCTGTGGGTGCGTGGGCCGCTGCAGCTAGGCTAGGGTTCCG
CTCGCCGAATCCGTCGCCGTGCTGCTGCCTGCCGGGATCTGCTGCTGCTTCGGGGCTCCG
CGGTTGATCCGGCGGGCGCGAGATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCT
GCAGCGCCACGAGCAGCGGGTGGACCGCCACCGCGACCACTCCACCGCCGCCAAGGCCGC
GGACGAGCTCCTCGCCGCCGCCCAGGATATGGCAGATATGAGGAACTGCTATGATAACCT
GCTTGCCGTTGCAGCAGCAATAGCAAACAGTTCATATGAATTCTCTGAAGCACTACAAGA
AATGGGTACTTGTTTACTTAAGAGAGTGACACCAACTAAAGATGGAATTAATGATAAGGT
TTTGCTGTTGCTCGGGAAATCGCAGTTTGAACTTCGGAAACTTGTAGATAGTTATCGTGT
TCATGTTCTTACTACCATTACCACTCCATCACAGTCCCTACTTAATGAGCTTCAAACTGT
AGAGGAAATGAAGCGCCAGTGTGATGAAAAAAGAGAATTGTTCGAAGTCTTGCTAAATGC
ACAGAAGGAAAAGGGGAGATCTAAGAATTCCAAAGGTGATCCTGTTGCGTCAGAGCAGTT
GAAACAAGCTCAGGAAGATTATCAAGAGGAAGCGACTCTTTTTCTTTTTCGGTTGAAGTC
ATTGAAGCAAGGACAGTTTCGAAGTCTTTTCACGCAAGCTGCTCGGCACCATGCCGCTCA
GTTAAATTTATTCAAAAAAGGTGTCAAGTCTCTCGAGGCTGTAGAGCCACATGTTAGGCT
TGCTGCTGAGCAACAACACATCGATCATCAGTTCAGTGCACTTGAAGATGAGGATTACTC
TGTTGAAGATGAAAATGATGACGATTACAATGACAGTCATGATGGAGAACTTTCTTTTGA
TTATGGAGAAAGTAAGGAAACTGCAGAAGCTGGTCATGCTTCCCATAGTCCTACAGAGGA
ATTTTTTGATAGAAACAAAGGAGATTATTCCTCTTTTCCTGGTGAAAGACAAAGACCTGT
AAGCCAGTCAGCTCCACTTTTTCCTGAGAAGAAGCTTGAAACAGCAGAAAGAGTAAAAGA
GTTGCGGCGTTCTGCAACGAGGAAGTTACATACTTACGTTTTGCCTACTCCAAATGATGT
TCAAGCCACCTCTCAGACAATCGCAGGAAATCCTACAAGTGGTTCTCCTATTGAGAGCAA
AAGTGTATTCCATTCATCTCCGCTCAACCCAAGTACACATATGGGAGCTTTAAGAGACAA
TAAGCTACCAAGTCCCGCCAGATTATCTAATGCACAGTCTGTGCTGAAAGAAAGCAATAC
CAATACAGCAGAAATAAGGACAATGCTCCCAGCTGTTGATCCGGCTTTACCAGGCTATAA
CAATTTGAAGGCTTCTTCTGACAACAAAAAAGTGAAGAGGGGGTCCTTTTCTGGTCCGAT
TCCTCTCCGATCAAGGTCAACAGAGAATATTGATGCCGCCGCCGCAAGGCACAGCTCTGC
ACATCAGCCAACAATTCATGTGAGAGTGTCACCCAGTTCCTCCCCGCCACCCATATCCTC
ACCCAGAATTAAGGAGCTTCACGAGCTGCCGCGGCCGCCCACTGGTGCATCAAGAAATAC
AGCATTTTCTAGTTTAGTCGCTCACTCCGCGCCGTTGGTACCAAATTCTGCCCCGTTGAC
ATCCAGAGGCCACTCAGGGCAGGACCATTTTAATTTTAGGGCCAGGCAAACACCACCAAG
TGCTCCACAAACTGCATCGCCTCTACCAACACCGCCTGGTCCTATATCCCGCAGTTTTTC
TATACCCTCTAGGGGCATTAGAACAGGTATTTCAGATGGCAAAGAAACAGAAGATCATCA
AGATAAAGGGGCCGCTAGAATGAGCCTCTCTTCTCTTCCTTCAGCGCAAACATTCTTGGA
GGATCCTCAACCTTTGCCAGCAGCTGCCGAGTCAGTTAGCAGAACATAGGGATATTTGGT
GTTAAGGTGGGATTTTATATGATATATAATATGTCATGCTAATCGAGAGGCTTGGCTACC
TTTTCGTGGAAAAACAATGTACATACTAGTATGAGAACTAAACCCATATTGCAAAGTAGC
TGGTGGTGGTTGGTGTCCCCCTATGGTTGAGTGTAGTTGTGCAAATAACGAGTTTGTTGA
ATAAAATTCTCCATTTTTCGCTCCGATAATTTTATGCAAGATTTGTCTGTGCTGTGCCAC
AGCCTGTTCTCAGGCATCATTTTGATCATCATGAATGGCAAGGGATTCCGGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_5591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33510.2	628	0.0	protein\|hydroxyproline-rich glycoprotein family protein, putative, expressed
Brachypodium v1_2	Bradi4g34820.1	622	0.0
Arabidopsis v10	AT2G33490.1	623	1e-108	hydroxyproline-rich glycoprotein family protein \| chr2:14183552-14187666 FORWARD LENGTH=623