barSeed - Barley Seed Development Database

Probe ABC13280

Source Contig ABC13280

barSeed

Links

Affymetrix Source Sequence (1192 bp)

>ABC13280 1192
TTCTCTCTGATATAACTTGAAACCACTTCACAGTTTATAGACTTATAAAAGGTGTATTAT
GCGAAAAACCTCAAATGCTGTTTGGCTTTGGCAATCAGTAATTGACCTATGCTGCTAAGG
GCGTTGCGTTACTATTATCAGTTATCAATTGGACTGGAAGATCAATAACTTTGTGGATAC
ATAAATATGCCAACGTTTTTGCAACATCTTTCCTGTATAACCCACAGCCACAGGAGTTGA
ATATTTTGAGGTGCTTAAGGCCCTGTTTGGATTGTCGTTTTACTTTGAAATACACCTGTA
AAAAATACATGCCTTGCTCTGTCGTTTTGTTTCCAGCCCAAAATTACTCAGTTGCCAGTA
TGGCGTAAGTTAAAACACCTCCGCATTCGATTACACCGTTCCCAAGCGCGCCCTAAGATT
AATTTGGGTGGAATACAAGTTGAGGCTTGGCCACACGGGGTCTTATACAGATAATGATAT
AAATGCATCCAGTTTCATTAATTTAGTTAAATATGCATAAGCAGGTCGCTACCTTCATCG
TCCAAAAGATTCTGCTGGATGATATTGGACTGCACTACGTATGTGCCACCGCTGAGCGTT
TCTATGCTGTAGGCAGCGTTTTAGGAAATATGGTAATATCACTTGCTGATCAGCCTTCCA
CAAGGTTGCTCAAGCACATTATTCGATGTTACCTCAGGCTGTCAGATAACCCCAGGGCCT
GTGTTGCACTACATAATTGCCTCCCTGACATGCTGAAAGATGGGACGTTCAACATTTCTC
TTAGGGATGACCCCGCGACAAGGCGCTGGCTCCAACAACTGCTGCATAACGTGACAGTGG
GTGGTATGGGAGGACCTGGCATGGGGGTGCCTCCCCAGCCGGGCCTGGATCACATGATGG
GGATATGATCCAGTTTAGTTGCTGCGATTCACAACAATAATGGAGTCCCTTGTGAATTGC
GGGTAGGGGAAGATTATCTTCCCTCGGCCTTCTAGAAGTAGGTTGTGCGATGTCGGTGTA
GTTTCAACCTTACGGAAAAAGGAAATGTTGTGTTGTGTGTGTGTCGAAACATCAGCAGCA
GCTCAAGCTGGTTTGCTTATCCTGTAATACTGTGAACACAAGCAAGGCAAGCTGTTTTCT
GCTTTTCTGGTGTTGCAGCGGAAATGTTTTTTTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372341	1408	0.0	791 - 1408	100	618 / 618	CUST_34007_PI390587928 CUST_14447_PI390587928	ABC13280
MLOC_33783.4	1292	0.0	855 - 1287	99	431 / 433	CUST_34007_PI390587928 CUST_14447_PI390587928	ABC13280
MLOC_33784.1	389	0.0	1 - 389	100	389 / 389	None	ABC13280
MLOC_33783.1	1335	0.0	958 - 1335	99	377 / 378	CUST_34007_PI390587928 CUST_14447_PI390587928	ABC13280
MLOC_20990.1	362	2e-146	1 - 282	100	282 / 282	CUST_14446_PI390587928	ABC13280
MLOC_33783.2	1121	3e-135	858 - 1119	100	262 / 262	CUST_34007_PI390587928 CUST_14447_PI390587928	ABC13280
MLOC_33783.3	1380	2e-96	864 - 1055	100	192 / 192	CUST_34007_PI390587928 CUST_14447_PI390587928	ABC13280