- Probe CUST_34007_PI390587928
- Source Contig U35_32780
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34007_PI390587928 | Hv_44K_v2 | ACTACATAATTGCCTCCCTGACATGCTGGAAGATGGGACGTTCAACATTTCTCTTAGGGA | 530 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.170 | 1.370 | 1.686 | 1.574 | 0.758 | 0.822 |
| Raw | 196.739 | 362.453 | 391.110 | 583.436 | 96.102 | 114.075 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372341 | 1408 | 7e-23 | 994 - 1053 | 98 | 59 / 60 | plus | ABC13280 |
| MLOC | MLOC_33783.3 | 1380 | 7e-23 | 1146 - 1205 | 98 | 59 / 60 | plus | ABC13280 |
| MLOC | MLOC_33783.1 | 1335 | 7e-23 | 1161 - 1220 | 98 | 59 / 60 | plus | ABC13280 |
| MLOC | MLOC_33783.4 | 1292 | 7e-23 | 1058 - 1117 | 98 | 59 / 60 | plus | ABC13280 |
| MLOC | MLOC_33783.2 | 1121 | 3e-22 | 1061 - 1119 | 98 | 58 / 59 | plus | ABC13280 |
| JLOC1 | JLOC1_21837.4 | 1122 | 4e-23 | 891 - 950 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_21837.2 | 1242 | 4e-23 | 1011 - 1070 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_21837.1 | 1266 | 4e-23 | 1035 - 1094 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC13280 | 1192 | 1e-23 | 406 - 465 | 98 | 59 / 60 | minus | ABC13280 |
| Harvest35 | U35_32780 | 773 | 3e-25 | 531 - 590 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19431 | 1261 | 1e-23 | 728 - 787 | 98 | 59 / 60 | plus |
Contig Sequence (773 bp)
>U35_32780 773 Hv_44K_v2 TGAACTTAAGTTACTCAATCGAACATTGGTTACCAGCTGACTGGTTAGTGATTAACATAT TCCCAAAACCAACATCATTTTCCTTGAAGAAGAAAAAACACAGAAATTTTTAGTACATCA TACATGGGCGACCAATTGATTCACCCACTTTTGGAAGATCTTGTCGCAATCGGCAAACAA ACTGTAGACATGCCCTGTGACAGCATATGCCATCGGCTGGCTTGTACCAGACATGCTGTT AATTGCCCCCTTCTCCAAAAGAAACAAAAGAAAATGTATAATGCATAGTGACAAATGATA TGAGTCCATCAGCTCAAGACCATGGTGTGATTGTGTTAGTAGCTGCTGAGCGACTCCATT GGCTCAGGCGTGCAAGATGTGTGAGCGGCCGCTGCTGAGCGTTTCTATGCTGTAGGCAGC GTTTTAGGAAATATGGTAATATCACTTGCTGATCAGCCTTCCACAAGGTTGCTCAAGCAC ATTATTCGATGTTACCTCAGGCTGTCAGATAACCCCAGGGCCTGTGTTGCACTACATAAT TGCCTCCCTGACATGCTGGAAGATGGGACGTTCAACATTTCTCTTAGGGATGACCCCGCG ACAAGGCGCTGGCTCCAACAACTGCTGCATAACGTGACAGTGGGTGGTATGGGAGGACCT GGCATGGGGGTGCCTCCCCAGCCGGGCCTGGATCACATGATGGGGATATGATCCAGTTTA GTTGCTGCGATTCACAACAATAATGGAGTCCCTTGTGAATTGCNGGTAGGGGA
Homology of Contig U35_32780 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |