barSeed - Barley Seed Development Database

Probe ABC12939

Source Contig ABC12939

barSeed

Links

Affymetrix Source Sequence (1233 bp)

>ABC12939 1233
CTCTTCTCCACTTAACACCAGCGCTCCACTCCTGCACAGTCCTCTGCACCAGCCAGCGCA
CGGCGAGCGCGCCGGCATTGGCGCCGTAAGATGGCGAGCGGCTCCGGGGAGCACTTCCTG
AGGCAGCTGAGCTCCAGCAACGGGCTGCAGGCCCCGCAGGACGGGTACGGCGGCGGCGGC
GGCGGCGGGCGGAGGAGGGGCTCGAGGCGGTGGTCCAAGAAGCGGGCCGGGAGAGGGTAC
GGCGGCGGCGGCAAGGGTGAGGCGTCGGCGTCGTCGGCGTCGGCCGGGAGGAAGCGGGTG
ATGGTGGTGGTGGACGACAGCTCCGGCGCCAAGCACGCCATGATGTGGGCGCTCACCCAC
GTCGCCAACAGGGGTGACTTCCTCACCCTGCTCCACGTCCTGCCGCACTTCGGCGCCGGA
GGCGAGGAGGCGCCCTCCCTCGCCAACTCCCTCGGCACGCTCTGCAAGGCCTGCAGGCCC
GAGGTGGAGGTGGAGGCGCTGGTGATCCAAGGCCCCAAGCTGGGCACCATCCTCAGCCAG
GTGAAGAAGCTGGAGGCCTCCGTGCTGGTGCTCAGCCAAACCAAGCCCTCTACCTTCTGC
TGGCTAAGCTGCTTGGCGCCGAGCAGAGGGGAGGAGGAGGTGGTGGAGCAGTGCATCAAC
CAGGCCGAGTGCCTGACGCTGGCGGTGAGGAAGCAGAGCAAGGGCGTCGGCGGATACCTC
GTCAGCACCCGGTGGCAGAAGAACTTCTGGCTCCTCGCTTGACCGTCCGTCGTCCCGTCC
GCCATGTCCACGACCGTGTTTCTATAAAAGCTCGCTGCTGAGTTTGTCTGTCTAGCTCCT
GCGTGATCTGAGTATTTTACACCAGCGTATCTGTCATTCTATGTGTTTTTTAACCCGTCC
ATCGAGTATAAAAAATAAAAAAAGATGTCCGTGCGTGCGTGCGTGCGTGCGGCCATGTCG
TTCGTGTGTCGCTGCGGTGGATCGTGCTGCTCCTGCTGCCCCCATCGTGTTGTAAAATGT
AAAGCCCCACAGAGTCCTAGGATTTGACCCTCCTATAGCCTTAGCCTTGCCGTCTTTTCA
GTGCGTGTAATTTGTGCCCCTTCTCTTTTTTATCTTTTCTGCTGCTAGACTTTCTCTTTC
TGCTGCAAGATTGTAATATGTACCTGATGTAGTACCGTCGTGTTGTGATGCACAAAAGAC
ATACTAGTATTGGAGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373707	1189	0.0	2 - 1189	98	1169 / 1194	None	ABC12939 ABC17425
MLOC_5068.2	1405	0.0	10 - 755	97	727 / 752	CUST_14836_PI390587928 CUST_9401_PI390587928	ABC12939
MLOC_5068.1	3105	6e-62	2313 - 2442	100	130 / 130	CUST_14836_PI390587928 CUST_9401_PI390587928	ABC12939 ABC23264
MLOC_67941.1	990	0.0	121 - 605	99	483 / 485	None	ABC12939 ABC17425
MLOC_16402.1	828	3e-150	4 - 576	84	492 / 587	None	ABC12939 ABC17425