barSeed - Barley Seed Development Database

Probe CUST_14836_PI390587928

Source Contig U35_49086

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14836_PI390587928	Hv_44K_v2	CCTGCAAGATTGTAATATGTACCTGATGTAGTACCGTCGTGTTGTGATGCACAAAAGACA	35	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.148	2.423	0.640	0.818	1.239	0.880
Raw	35.237	23.454	6.002	11.323	5.138	4.111

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5068.1	3105	2e-24	958 - 1017	100	60 / 60	minus	ABC12939 ABC23264
MLOC	MLOC_5068.2	1405	2e-24	32 - 91	100	60 / 60	minus	ABC12939
JLOC1	JLOC1_3226.1	1708	8e-25	1471 - 1530	100	60 / 60	plus
Harvest21	ABC12939	1233	1e-24	1143 - 1201	100	59 / 59	plus	ABC12939
Harvest35	U35_49086	275	3e-25	36 - 95	100	60 / 60	minus
Harvest35	U35_18321	1233	1e-24	1143 - 1201	100	59 / 59	plus

Contig Sequence (275 bp)

>U35_49086 275 Hv_44K_v2
TTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTAGTATGTCTTTTGTGCATCACAACACGAC
GGTACTACATCAGGTACATATTACAATCTTGCAGGAGAAGGAGAAAGTCTAGCAGCAGAA
AAGATAAAAAAAAGGGGGGGCACAAATTACACGCACTGAAAAGACGGCAAGGCTATAGGA
GGGTCAAATCCTAGGACTCTGTGGGGGGCTTTACATATTACAACACGATGGGGGCAGCAG
GAGCAGCACGATCCACCGCAGCGACACACGAACGA

Homology of Contig U35_49086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None