barSeed - Barley Seed Development Database

Probe ABC12838

Source Contig ABC12838

barSeed

Links

Affymetrix Source Sequence (1906 bp)

>ABC12838 1906
GCTCGCTGCCCCGTCGCATCCCTGCTTCCCAACGCCGTCCAGATCCGCCCCTGCCGCCAT
GGCCGACCCAGGAGACGAGCAGCGCGCGGCCCTGATCGCCGCGGCGTCTCTCTTCCCCGT
GCCGGACGGCGCGACCTTCTCCTACGGGACGGCGGGGTTCCGCGCCGACGGGAGCACCAT
GGCCCCCGCGGTGTGCCGCGCCGGGATCGTGGCGGCGCTGCGCTCCGTGAAGCTGGGCGG
CGCCGCCGTCGGGCTGGTCATCACGGCGTCGCACAACCCCGTCGGCGACAACGGCGTCAA
GATCGTGGACGCCGACGGCGGCATGATGTCGCAGGCCTGGGAGCCCTTCTCCGACGCCCT
CGCCAATGCCCCCACCCCCGACGCCCTCCTGCAGCTGGTGCTTCAGTTTGCAAAGGATGA
AGGGATCACACTTGGTGGAGGTCACTCGGCACAAGTGCTGCTGGCAAGAGACACGAGGCC
TACCGGAGAGTACCTCCTCGACGTTGCAACCAAAGGTATAAGCGCAATAGTAGGTTCAGT
TGCACTTGACATGGGGATCCTGACAACTCCACAGCTACACTGGATGGTTCGGAACAAAAA
CAAAGGATTGAAAGCCTCTGAAGCAGATTATTTCACACAAATCACCGAGTCATTCAGGCA
TTTATTGGAATTAACCCCTGATGCTAAAGGCATCGATGAACTAAATGAGAAACTGATTGT
GGATGGCGCAAATGGTATTGGTGGGTTGAAGTTGGAACAAATAAAGCCAAATCTGGCCAG
ATTAGACATTCTTGTGAGAAATTCAGGAAAAGAAGGAGAAGGAATACTGAATGAAAGGTG
TGGTGCTGACTTTGTTCAAAAGGAGAAGGTTCTTCCTCTTGGGTTTGGCCCTGATGATGT
TGGCGTCAGGTGTGCAAGTTTTGATGGAGATGCAGATAGACTTGTTTATTTTCATGTTAC
ATCGCTTAGCAAGACTAGTGTTGATCTTGTCGATGGCGATAAGATATTATCACTATTTGT
CCTCTTTATCAGAGAACAGTTGGATATTATCAATGGAAAAGACAACAAAGGATTATTGCC
TACAAGGTTTGGTGTAGTTCAAACTGCTTATGCCAATGGAGCATCAACAGAATTTCTTAA
TAACCTTGGTCTTGAAGTTGTCTTCACTTCAACAGGAGTGAAATATCTCCACAAGAAAGC
TCTAGAATACGATATTGGTATCTACTTTGAGGCCAATGGACATGGGACAGTGCTATTCGC
TGATGAGTTTGTCTCGCGTCTAGTGTCTTTGACCGCTAAGCTTTCTGAAGCTGCAGGTTC
TCCACAGCACCAAGCTGCCTTGAGATTATTAGCGACAAGTCAATTAATTAATCAAGCAGT
GGGTGACGCTATAAGTGGAATGCTTTTGGTGGAGGCTGTTTTACAGCATAAGAGATGGTC
ATTCCAGAATTGGTGTGACCTATACACTGATCTACCAAGCAAACAACTCAAGGTTAAAGT
GAAAGATCGGACTACTATTGTTACAACCGATGCAGAACGGAAAGTTTGCCAACCATCTGG
CTTGCAAGAATTGATAGATAAGGAAGTCGTTAACCACTCTCACGGGCGGTGCTTTGTGCG
ACCATCTGGAACTGAGGATGTGGTAAGAGTATATGCAGAGGCATCTACCGTGGAAGCAGC
AGACAGCCTTGCAAAATCTGTAGCACAGCATGTTGAGCGCATTCTTGGGTTTTGCTAGTT
GCGTTCTTCTTTTATCTTTCATCTTTTTCTGAAACGTGTAATTTTCAATTTTAGCTGACC
CCCCTACGTTTTGAAGAATGTAGACATATATGTATTTTGTTTCTGTGCAATTGCTATTTT
TTATTGTACTGTACAAGTATATGCAGAGGCATACTTTAAGGTCGAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_65534.7	2039	0.0	78 - 1985	99	1906 / 1908	None	ABC12838
MLOC_65534.8	1926	0.0	22 - 1926	99	1903 / 1905	None	ABC12838
MLOC_65534.4	2149	0.0	1652 - 2069	99	416 / 418	CUST_24155_PI390587928	ABC12838
MLOC_65534.5	2126	0.0	82 - 739	100	658 / 658	None	ABC12838
MLOC_65534.10	1458	0.0	1 - 1237	100	1237 / 1237	None	ABC12838
MLOC_65534.6	1831	0.0	82 - 739	100	658 / 658	None	ABC12838
MLOC_65534.3	2087	0.0	1735 - 2087	100	353 / 353	None	ABC12838
MLOC_65534.1	2152	6e-74	1749 - 1900	100	152 / 152	None	ABC12838
MLOC_65534.9	1587	0.0	799 - 1533	99	733 / 735	None	ABC12838
MLOC_65534.2	1872	7e-133	820 - 1077	100	258 / 258	None	ABC12838