barSeed - Barley Seed Development Database

Probe CUST_24155_PI390587928

Source Contig U35_18466

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24155_PI390587928	Hv_44K_v2	CAAAACTGGCGTCCCCATTTTTAAAACACATGAATCATCGAATTCAAGATTCTTAAGCAA	1969	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.514	1.887	1.287	0.713	0.272	0.262
Raw	227.176	427.945	257.370	230.861	30.510	32.276

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65534.4	2149	2e-24	2084 - 2143	100	60 / 60	plus	ABC12838
JLOC1	JLOC1_43128.2	2500	8e-25	1930 - 1989	100	60 / 60	plus
Harvest35	U35_18466	2044	3e-25	1970 - 2029	100	60 / 60	plus

Contig Sequence (2044 bp)

>U35_18466 2044 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGAGCTCCAGTCCAACCCAGCCAGCTAGGCTCGCTGCCCCG
TCGCATCCCTGCTTCCCAACGCCGTCCAGATCCGCCCCTGCCGCCATGGCCGACCCAGGA
GACGAGCAGCGCGCGGCCCTGATCGCCGCGGCGTCTCTCTTCCCCGTGCCGGACGGCGCG
ACCTTCTCCTACGGGACGGCGGGGTTCCGCGCCGACGGGAGCACCATGGCCCCCGCGGTG
TGCCGCGCCGGGATCGTGGCGGCGCTGCGCTCCGTGAAGCTGGGCGGCGCCGCCGTCGGG
CTGGTCATCACGGCGTCGCACAACCCCGTCGGCGACAACGGCGTCAAGATCGTGGACGCC
GACGGCGGCATGATGTCGCAGGCCTGGGAGCCCTTCTCCGACGCCCTCGCCAATGCCCCC
ACCCCCGACGCCCTCCTGCAGCTGGTGCTTCAGTTTGCAAAGGATGAAGGGATCACACTT
GGTGGAGGTCACTCGGCACAAGTGCTGCTGGCAAGAGACACGAGGCCTACCGGAGAGTAC
CTCCTCGACGTTGCAACCAAAGGTATAAGCGCAATAGTAGGTTCAGTTGCACTTGACATG
GGGATCCTGACAACTCCACAGCTACACTGGATGGTTCGGAACAAAAACAAAGGATTGAAA
GCCTCTGAAGCAGATTATTTCACACAAATCACCGAGTCATTCAGGCATTTATTGGAATTA
ACCCCTGATGCTAAAGGCATCGATGAACTAAATGAGAAACTGATTGTGGATGGCGCAAAT
GGTATTGGTGGGTTGAAGTTGGAACAAATAAAGCCAAATCTGGCCAGATTAGACATTCTT
GTGAGAAATTCAGGAAAAGAAGGAGAAGGAATACTGAATGAAAGGTGTGGTGCTGACTTT
GTTCAAAAGGAGAAGGTTCTTCCTCTTGGGTTTGGCCCTGATGATGTTGGCGTCAGGTGT
GCAAGTTTTGATGGAGATGCAGATAGACTTGTTTATTTTCATGTTACATCGCTTAGCAAG
ACTAGTGTTGATCTTGTCGATGGCGATAAGATATTATCACTATTTGTCCTCTTTATCAGA
GAACAGTTGGATATTATCAATGGAAAAGACAACAAAGGATTATTGCCTACAAGGTTTGGT
GTAGTTCAAACTGCTTATGCCAATGGAGCATCAACAGAATTTCTTAATAACCTTGGTCTT
GAAGTTGTCTTCACTTCAACAGGAGTGAAATATCTCCACAAGAAAGCTCTAGAATACGAT
ATTGGTATCTACTTTGAGGCCAATGGACATGGGACAGTGCTATTCGCTGATGAGTTTGTC
TCGCGTCTAGTGTCTTTGACCGCTAAGCTTTCTGAAGCTGCAGGTTCTCCACAGCACCAA
GCTGCCTTGAGATTATTAGCGACAAGTCAATTAATTAATCAAGCAGTGGGTGACGCTATA
AGTGGAATGCTTTTGGTGGAGGCTGTTTTACAGCATAAGAGATGGTCATTCCAGAATTGG
TGTGACCTATACACTGATCTACCAAGCAAACAACTCAAGGTTAAAGTGAAAGATCGGACT
ACTATTGTTACAACCGATGCAGAACGGAAAGTTTGCCAACCATCTGGCTTGCAAGAATTG
ATAGATAAGGAAGTCGTTAACCACTCTCACGGGCGGTGCTTTGTGCGACCATCTGGAACT
GAGGATGTGGTAAGAGTATATGCAGAGGCATCTACCGTGGAAGCAGCAGACAGCCTTGCA
AAATCTGTAGCACAGCATGTTGAGCGCATTCTTGGGTTTTGCTAGTTGCGTTCTTCTTTT
ATCTTTCATCTTTTTCTGAAACGTGTAATTTTCAATTTTAGCTGACCCCCCTACGTTTTG
AAGAATGTAGACATATATGTATTTTGTTTCTGTGCAATTGCTGATTTTTTATTGTACTGT
ACAAGTATATGCAGAGGCATTACTTTAAGGTCGATTGTTTGTTGCCCGCCAAAACTGGCG
TCCCCATTTTTAAAACACATGAATCATCGAATTCAAGATTCTTAAGCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_18466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g09720.1	563	protein\|phosphoacetylglucosamine mutase, putative, expressed
Brachypodium v1_2	Bradi1g54610.1	563
Arabidopsis v10	AT5G18070.1	556	\| Symbols: DRT101 \| phosphoglucosamine mutase-related \| chr5:5981117-5982787 FORWARD LENGTH=556