barSeed - Barley Seed Development Database

Probe ABC12811

Source Contig ABC12811

barSeed

Links

Affymetrix Source Sequence (837 bp)

>ABC12811 837
GCACGGCGGCCGCACGCCGGAGCAGGAGAGGAAGAAGGGGGTGCCGTGGACCGAGGACGA
GCACAAGTTGTTCCTCCTAGGCCTGAAGAAGTACGGCAAAGGGGACTGGAGGAACATTTC
GCGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGCAGAAGTACTT
CATCAGGCTCAGCTCCGGTGGAGGCAAGGACAAGAGGAGGTCGAGCATCCACGACATCAC
CACGGTGCACCTGACCGACGACCAGCCTCCCTCGCCGTCCCAGTCATCCATGATCACCCA
GTCCAGCGCACCGGCTCCGAGCTCAGCAACAGGGCAGTTCTCGCTGCCACCCGACACCAA
GCAGCACGGCGGAGCGAATGCGCCATACAACTCGCCGAGCCGGACGATGGGGATGCCGAG
CTATGGCATGGGTTTGCAAGATCAGGGTCTTCAGTGTGGTCCTCTACATGATCAGCTGGC
CGCGAACCGGAGTATGTTGTATTAGAAGATGCAACCGTTCGATCCATTTCAACGAAAACC
GACCAGAAGCCTAGTGTAATATGGCCTTTGCTGTAGCTTCACTGCCTGTATTATTATTGG
AGTAAGTAATTGATTATGGGGATTTTTCAGAACATAGCAGAGAGAGAGGTATGATGCTGG
TGATGCTTGGTACTAGTCCATAATTTCTGGTGTGGATACTGAGAATGTAAGGGAAAAGAT
TGTCAAGAACCTGCTTGATGCTGTAGTATCTTGAGACGAGCAGACAGGGAATACTAGTGC
TCAGTACTGATCAAAAACCAAAAAACCAAAAAAAGGGCGCCGCTCGCGATCTAGAAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362184	1469	0.0	671 - 1469	99	791 / 799	None	ABC12811 ABC12812
MLOC_20277.1	754	0.0	1 - 740	100	740 / 740	None	ABC12811 ABC12812
MLOC_60301.1	1178	1e-91	19 - 240	94	209 / 222	None	ABC12811
MLOC_60301.2	912	7e-90	19 - 237	94	206 / 219	None	ABC12811
AK354396	1288	5e-71	838 - 1052	89	202 / 227	CUST_5099_PI390587928	ABC12811
MLOC_79329.2	821	1e-67	390 - 628	86	216 / 251	None	ABC12811 ABC40330
MLOC_70659.2	1914	7e-60	879 - 1120	84	206 / 245	CUST_41205_PI390587928	ABC12811 ABC15670
MLOC_79329.1	1037	5e-56	412 - 584	89	165 / 185	None	ABC12811 ABC40330
MLOC_9835.2	1971	2e-51	713 - 958	82	208 / 253	CUST_21021_PI390587928 CUST_11089_PI390587928	ABC12811 ABC15670 ABC15705