barSeed - Barley Seed Development Database

Probe CUST_11089_PI390587928

Source Contig U35_7656

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11089_PI390587928	Hv_44K_v2	TACTGAAAAACAAAATCCGAAATAAGCCTTCGATGAAGCTCGTACTCCCGTGTGCGTGCT	579	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.951	4.939	1.381	0.728	0.281	0.342
Raw	99.529	200.146	46.353	35.617	3.883	6.308

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9835.1	2501	2e-24	1866 - 1925	100	60 / 60	plus	ABC15670 ABC15705
MLOC	MLOC_9835.2	1971	2e-24	1493 - 1552	100	60 / 60	plus	ABC12811 ABC15670 ABC15705
JLOC1	JLOC1_6384.1	1847	8e-25	1535 - 1594	100	60 / 60	plus
Harvest21	ABC15705	664	3e-25	580 - 639	100	60 / 60	plus	ABC15705
Harvest35	U35_7656	664	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_7656 664 Hv_44K_v2
CCGGTCCAGCATCCACGACATCACCACCGGCAACGTGCCCGACGAGGACGACCGCAACAG
CCCCTCGGGGTCCCCGCCGTCCGCGGTCACCACCGCCGACACGAAGCCCTCGCCGTCGTT
CGGCGGGCAATGGCAACGGCACGCCTTCATGCCGCCGACGCTGCCAGTGGGGACGCTCGG
CGGCGGCCATCCCTACGGCAACGTGAAGCTCGAGCACCAGAGCTCGTTCATGGACGGCGG
CACGGTCCTCGACATCGACGACTCGCTCCTCCTGCAGATGCAATGCGGACAGCTGTGACG
TCCCCTCTCGCCGCGGCGAATCCCGCCCGGAGGACAAAACAGCGGCGGCACCCATCACCA
TCATCGCATCCACGGGCGTGCTTGCCTCGAGAGCAGTCTGGTTGCAGAGCCGGCGTGCTT
GTGTCTCGATCGACCGACACCCAGATGATGGCACCCAAGCGAAAACATCTGAGAGCGACA
CGGCGGTGCGGAGCGTGCAGGTCTGCGTCCATGGAGAAAGAAACCTCAAGAACCCATCGA
CGTGCCGCCCAGTGTACATAGAACCTCAACCTCCCACTGTACTGAAAAACAAAATCCGAA
ATAAGCCTTCGATGAAGCTCGTACTCCCGTGTGCGTGCTCCGGTCTCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_7656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None