barSeed - Barley Seed Development Database

Probe ABC12765

Source Contig ABC12765

barSeed

Links

Affymetrix Source Sequence (1300 bp)

>ABC12765 1300
GCAAGCTCCATCAGTGGCTGGCTCCGCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTCCCTGAGCTCTCTGTCACTCCATGAGTCCATGTCCATGCACAG
GTAAAGCTGCCGCGTCCTAGAAGATCCAGGCGATGGGATGAGGCCCACTGCGGCAGCAAC
CGGACCTTCCTTCTTCCTCCCCAGATGCCAGTCGGTCCCGGCCCCGGCATCATCAAGGGC
GGCAGGAGTAGCAGCAGCTGCCGATCCATGCAAGCCGCCCAACAAGGCGATCCGGTCATG
GCGAGCCGCGTCGGCAGGCAGCAACGGCGGCGACGAGCGCGGCCAGTCCGTGTCGACGGT
GGCGACGACACCGTCGGGAAGGCGGGCCCGGCTGTCGGCGAGGCGGCGGGAGAGCATCAG
GCTCCTGGACGCGCTGCCGGACCAGGGCGGCATCGGCGAGTTCCTGCGGCACCCCGCCGG
CGTGGAGTCCCTGCTCAACACCCGGGCGCTGCAGAGCTTCGCGCCGGTGGAGTCGGAGTC
GGACGGCACCTTCAGGTGCACGCTGCACCCCATGGGCTTCCTCGGCTTCCAGGTCGCACC
GGTCCTGGACCTCCGCGTCACCCCGACCCGCGACGACTGCACCGTCGAGATGCTCTCCTG
CAGGTTTGAGGGTTCGGACTCCATCGAGCAGCAGAATGAGCTCTTTTCAGCGGTAATGAC
GAACCGAATAACATGGGGAGACAATGGTGATGAGGAGCCATGCTTGGACATCGATGTCAA
TCTGGAGGTCACCCTGGAGGTGTACACGAAGCCATTCAGCTTGCTCCCGCTGTCGGCAGT
GGAGAAACCAGGCAACCTGCTGATGCAAGGGCTGCTTGACAGGCTTGTGCCGATGCTGGG
TGAGCAGCTGCTGAGGGACTACCATTCCTGGGTTCAGCAGCAGACCCAGTCTTCCTCCTC
ATGACTCACTGTGGAAAGTCTGAAACTAACACTATCTACCTAGCAGATTCCTGGGCTTCA
TGGCCGGGTCGGTTTTCATCAAATCCAGCCGGCTGCACCACCAAGGAAGAATCACGAGGA
AAACAATCATACATACACGCAGCGTGGGTTAATTTGTGGATGTGGATTGATGCTTGCATG
ATACAAACCCACTGTACGTAGAGTATAATAGAGTAGAATTGGCCAGGGATAGTCTTTCCG
AAACAGAGACAAGAAAATGGGGATAGATATGTTCAACAATCATGATGCAAACCTTCAAGA
TCGCTGATGTGAAGATGTTATTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360567	2024	0.0	911 - 2023	100	1113 / 1113	CUST_31571_PI390587928	ABC05573 ABC12765
MLOC_52653.1	4484	4e-59	3159 - 3283	100	125 / 125	CUST_41015_PI390587928 CUST_10135_PI390587928 CUST_3710_PI390587928	ABC12765 ABC15390
AK354965	1087	0.0	44 - 900	100	857 / 857	None	ABC12765
MLOC_52653.2	830	0.0	29 - 830	100	802 / 802	None	ABC12765
MLOC_52652.7	3846	4e-59	3159 - 3283	100	125 / 125	CUST_41015_PI390587928 CUST_10135_PI390587928 CUST_3710_PI390587928	ABC12765 ABC15390
MLOC_52652.1	3340	4e-59	2292 - 2416	100	125 / 125	CUST_10135_PI390587928 CUST_41015_PI390587928 CUST_3710_PI390587928	ABC12765 ABC15390
MLOC_52652.2	3337	4e-59	2289 - 2413	100	125 / 125	CUST_10135_PI390587928 CUST_41015_PI390587928 CUST_3710_PI390587928	ABC12765 ABC15390