barSeed - Barley Seed Development Database

Probe CUST_3710_PI390587928

Source Contig U35_5240

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3710_PI390587928	Hv_44K_v2	GGGGATAGATATGTTCAACAATCATGATGCAAACCTTCAAGATCGCTGATGTGAAGATGT	1218	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.378	3.852	1.140	0.875	0.295	0.440
Raw	147.872	280.917	68.610	84.255	10.008	15.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52652.7	3846	2e-24	3166 - 3225	100	60 / 60	minus	ABC12765 ABC15390
MLOC	MLOC_52653.1	4484	2e-24	3166 - 3225	100	60 / 60	minus	ABC12765 ABC15390
MLOC	MLOC_52652.1	3340	2e-24	2299 - 2358	100	60 / 60	minus	ABC12765 ABC15390
MLOC	MLOC_52652.2	3337	2e-24	2296 - 2355	100	60 / 60	minus	ABC12765 ABC15390
JLOC1	JLOC1_33756.1	4384	8e-25	1411 - 1470	100	60 / 60	plus
JLOC1	JLOC1_33755.4	5098	8e-25	2285 - 2344	100	60 / 60	minus
JLOC1	JLOC1_33755.3	5101	8e-25	2288 - 2347	100	60 / 60	minus
JLOC1	JLOC1_33755.2	5106	8e-25	2293 - 2352	100	60 / 60	minus
JLOC1	JLOC1_33755.1	4919	8e-25	2106 - 2165	100	60 / 60	minus
Harvest21	ABC12765	1300	3e-25	1219 - 1278	100	60 / 60	plus	ABC12765
Harvest35	U35_5240	1322	3e-25	1219 - 1278	100	60 / 60	plus

Contig Sequence (1322 bp)

>U35_5240 1322 Hv_44K_v2
GCAAGCTCCATCAGTGGCTGGCTCCGCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTCCCTGAGCTCTCTGTCACTCCATGAGTCCATGTCCATGCACAG
GTAAAGCTGCCGCGTCCTAGAAGATCCAGGCGATGGGATGAGGCCCACTGCGGCAGCAAC
CGGACCTTCCTTCTTCCTCCCCAGATGCCAGTCGGTCCCGGCCCCGGCATCATCAAGGGC
GGCAGGAGTAGCAGCAGCTGCCGATCCATGCAAGCCGCCCAACAAGGCGATCCGGTCATG
GCGAGCCGCGTCGGCAGGCAGCAACGGCGGCGACGAGCGCGGCCAGTCCGTGTCGACGGT
GGCGACGACACCGTCGGGAAGGCGGGCCCGGCTGTCGGCGAGGCGGCGGGAGAGCATCAG
GCTCCTGGACGCGCTGCCGGACCAGGGCGGCATCGGCGAGTTCCTGCGGCACCCCGCCGG
CGTGGAGTCCCTGCTCAACACCCGGGCGCTGCAGAGCTTCGCGCCGGTGGAGTCGGAGTC
GGACGGCACCTTCAGGTGCACGCTGCACCCCATGGGCTTCCTCGGCTTCCAGGTCGCACC
GGTCCTGGACCTCCGCGTCACCCCGACCCGCGACGACTGCACCGTCGAGATGCTCTCCTG
CAGGTTTGAGGGTTCGGACTCCATCGAGCAGCAGAATGAGCTCTTTTCAGCGGTAATGAC
GAACCGAATAACATGGGGAGACAATGGTGATGAGGAGCCATGCTTGGACATCGATGTCAA
TCTGGAGGTCACCCTGGAGGTGTACACGAAGCCATTCAGCTTGCTCCCGCTGTCGGCAGT
GGAGAAACCAGGCAACCTGCTGATGCAAGGGCTGCTTGACAGGCTTGTGCCGATGCTGGG
TGAGCAGCTGCTGAGGGACTACCATTCCTGGGTTCAGCAGCAGACCCAGTCTTCCTCCTC
ATGACTCACTGTGGAAAGTCTGAAACTAACACTATCTACCTAGCAGATTCCTGGGCTTCA
TGGCCGGGTCGGTTTTCATCAAATCCAGCCGGCTGCACCACCAAGGAAGAATCACGAGGA
AAACAATCATACATACACGCAGCGTGGGTTAATTTGTGGATGTGGATTGATGCTTGCATG
ATACAAACCCACTGTACGTAGAGTATAATAGAGTAGAATTGGCCAGGGATAGTCTTTCCG
AAACAGAGACAAGAAAATGGGGATAGATATGTTCAACAATCATGATGCAAACCTTCAAGA
TCGCTGATGTGAAGATGTTATTCAATTCCACTGTTTCAGCTATCCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_5240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41040.1	261	6e-91	protein\|expressed protein
Brachypodium v1_2	Bradi3g40337.2	288	3e-105
Arabidopsis v10	AT4G31115.2	274	2e-55	Protein of unknown function (DUF1997) \| chr4:15130243-15131847 FORWARD LENGTH=274