barSeed - Barley Seed Development Database

Probe ABC12627

Source Contig ABC12627

barSeed

Links

Affymetrix Source Sequence (1666 bp)

>ABC12627 1666
GGGCTGCAGGGAATACTCTCCTACTCCGCTTTGCCCCCCTCCCCCCTCCTTCCTGCTGCC
CTGCCCCGTCTACAGCGCCCTACAGCTACAGTTAGGCGGCAACTCGCCTCCGCCAACGCC
GCCGCCGAGGCAAGGTGAGCCCAAGCCCTCCGAATCGCTTCCTCATTCGTGGACCCACTC
CTCCTTCCCCTTCTTTCGAGCGACATTGGAGTGATCCTCGCCGCGCCTTAAAAACCCTAG
GTTTTTGGTGGCGGCGTCGTCCGTCAGCAGGCAGGTGGACGGCCCTCCATCTCCATGGAT
CCCGGCGACGCACCTGAACGGATTCCCAAGGAAAGGGGTTATCGGAGCAGAGACAGCCCA
CCTCGTCGTAACGCAACTGGAGCAGGCTCAGATGCTCATCGTCACTCAACTGGAGCAGGC
TCAGATGCTCATCGGCACGGGAGAGACAGGATGACCCACCGCGTCCCTGCCAAGCGCGTG
AAGGATGAGCTGCCCGAGTCGTCCGAGCCGCCGCCGCCGTCACGGCTCAAGACTGTGGTG
CCCCGTCCCGTTCAGGACAAAGACGAGCAATTCGTTTGGCCCTGGATGGGTGTGCTGGTC
AATGTGCCTACCGAGTGGAAAGGCGGCCGCCAGGTTGGGGAAAGTGGGAACCGCTTGAAG
GAGCAGCTCTCGGGCTTTTGCCCACAGAAGGTGATTCCTTTGTGGAATCATAGAGGTCAC
ACGGGAAATGCGATTGTTGAGTTTGGAAAAGACTATGCTTGCTTCTGTAATGCGTTCAAG
TTTGAAAATCACTTTGAGGCAGAAGGATATGGCAAACGGGACTGGGAGACACGCAAGTAT
CGTGGGTCGGAGATGTATGGATGGGTTGCAAGGGCTGATGATCAAAGAACTCCGGGGCCA
ATTGGGGAGCATCTACAAAAAAATGGTGATCTGAAAACTGTGGCAGAGCTTGAGAATGAA
GGAACACGCAAAACTGACAAACTGGTAGCTAATTTAGCCATTCAAATTGAGGTAAAGGCC
AAGCATGTCCAAGAACTTGAGTGCAAGTACAATGAGACGACAACCTCACTTGACAAGGTG
ATGGAAGAGAAGGAGCAGGTCCTCCAGAGATACAATGATGAAATACACAAGATGCAGCAA
CTTGCTCGTAAGCATTCTCAGATGATCATCAATGAGAATCAGAGGCTCCGTTCAGAACTG
GAGTCCAAGATGCAGGATCTTGAATTAAAATCCAGGCAGCTTGATGAACTTGCTGTGCGT
AGTGACTCGGACAGAAGGAACCTTGAGAAAGAGAAGGAAAAGAACGAGATGAAAGCAAAA
TATCTTAAGATGGCAACATCGGAGCAACAGAGGGCGGATGAAAATGTGCTGAAGCTTGTG
GAAAAACACAAGAGGGAGAAACAAGCTGCTCTAAATGAGATTATCAAGTTAGAGCAGAAA
CTGGATGCCAAGCAGAAGCTTGAGTTAGAAATAAAACAGATGCAGGGAAAATTGGAAGTG
ATGAAGCACATGCCAGGTGTGGAAGACTCCGAATCAAAAAGGAAGATAGATGAACTTAGT
GCTGAGCTTCAAGACAAGTACGATGAAATGGATGCAATGGAATCGCTCCACCATACTCTG
CTTATGAAGGAAAGGATAAGCAATGATGAGTTGCAAGATGCTCGGA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_57689.3	1882	0.0	164 - 1813	99	1646 / 1650	CUST_291_PI390587928	ABC12627 ABC21093
AK363414	2278	0.0	2 - 1640	99	1634 / 1639	CUST_19732_PI390587928 CUST_291_PI390587928	ABC12627 ABC21093
MLOC_57689.1	1765	3e-56	1590 - 1709	100	120 / 120	CUST_291_PI390587928	ABC12627 ABC21093
AK374335	2435	0.0	265 - 1418	84	971 / 1160	None	ABC12627 ABC13559
MLOC_32832.3	1577	0.0	178 - 1331	84	969 / 1158	None	ABC12627
MLOC_32832.6	1606	0.0	164 - 1317	84	969 / 1158	None	ABC12627
MLOC_32832.2	1546	0.0	179 - 1332	84	969 / 1158	None	ABC12627
MLOC_32832.1	1562	0.0	232 - 1385	84	969 / 1158	None	ABC12627
MLOC_32832.4	1722	0.0	178 - 1331	84	969 / 1158	None	ABC12627
MLOC_32832.5	1725	0.0	178 - 1331	84	969 / 1158	None	ABC12627
MLOC_72178.1	1175	0.0	2 - 836	89	751 / 844	CUST_9063_PI390587928	ABC12627
MLOC_39563.1	1073	3e-146	10 - 375	92	338 / 366	CUST_23842_PI390587928	ABC11159 ABC12627
MLOC_57689.2	442	1e-139	165 - 440	99	274 / 276	None	ABC12627 ABC21093