- Probe CUST_19732_PI390587928
- Source Contig U35_38754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19732_PI390587928 | Hv_44K_v2 | CTTCTGTTATTTTTTCATGAATGTTGGTAAACGTTTAGTTGTTGGGGTTTCCCTGGATAT | 5 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.659 | 1.935 | 1.094 | 0.861 | 0.447 | 0.439 |
| Raw | 1066.196 | 1968.837 | 963.032 | 1170.435 | 219.157 | 232.452 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363414 | 2278 | 3e-21 | 2138 - 2197 | 97 | 58 / 60 | plus | ABC12627 ABC21093 |
| MLOC | MLOC_7442.1 | 908 | 3e-21 | 673 - 732 | 97 | 58 / 60 | plus | ABC21093 |
| JLOC1 | JLOC1_4906.1 | 995 | 2e-21 | 764 - 823 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC21093 | 634 | 6e-22 | 129 - 188 | 97 | 58 / 60 | minus | ABC21093 |
| Harvest35 | U35_38754 | 295 | 3e-25 | 6 - 65 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_20802 | 1119 | 6e-22 | 447 - 506 | 97 | 58 / 60 | plus |
Contig Sequence (295 bp)
>U35_38754 295 Hv_44K_v2 TGAATATATCCAGGGAAACCCCAACAACTAAACGTTTACCAACATTCATGAAAAAATAAC AGAAGCCCACTTTTAGTTCAATTTTTCAGTAATCCAAATATTTGGGCTCAACGCTTCCTT TTTTGGGGGCGCCACTGCCTTAGGACGTACTGGACAGCCTTTTTCAAAGTTGCTCTCCTT TTTTTTTTGAAGTTCCACAACTCAGGTACAGGATAGCGGCCACTAGGGTTATACTCGTTA ACTTCAAGCAAAGCTTTTTTTACCAAGCCATACACTTTTTCGCCATACTTTTTTT
Homology of Contig U35_38754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |