barSeed - Barley Seed Development Database

Probe ABC12595

Source Contig ABC12595

barSeed

Links

Affymetrix Source Sequence (1231 bp)

>ABC12595 1231
CGCGTCGCGCCTGGCGAGAAGCCCCGCGGAGCGATCGGCCATGGCGGCTTCCCTCCGAGC
GTCGTCCTCCTCCTCCCTCCGCTCGAGCCTCCTCTCCTCCCCCGCCGCATGGTCTCCCTG
GCGCCTGCTCCTCTCCTCCCCCGTCCACTCGGACGCCGCCCACCAGACCGAAACCCTCGC
CTTCCACGAGATCCAGCTCTCCCCGGAGAAGCCGCCCACCGCCACCGCCTTCGTCCTCCA
CGGCCTCCTGGGCTCCGGCCGCAACTGGCGCACCTTCTCCCGCACCCTCGCCTCCCAGCT
CCGCGACCGCTCCCCCTCCGACGAGTGGAAGATGGTTCTTGTGGATTTGAGGAACCATGG
GAGCTCAGCCAGGATCAAAGGGCTGGGCCCACCCCATGATATGTCGAGTGCGGCCAGGGA
TCTCGCTGATTTGGTGAAGGCCCGGGGCTGGACATGGCCGGATGTCGTCGTGGGTCACTC
CATGGGTGGAAAGGTCGCACTGGATTTTGCGGAGAGTTGCTCCCGTGGCGATTATGGAGA
ATCTGCTGCTCTTCCCAAACAGCTCTGGGTGCTTGATTCTGTCCCCGGAGAAGTAAAAAT
AGATAACAGTGACGGTGAAGTTGAGCGGGTTTTGCAAACACTAGCAAGTCTTCCTTCATC
GCTTCCATCGCGCAAGTGGGTTGTGGACCACATGGTCAGCCTGGGATTCTCCAAGTCACT
TTCAGACTGGATTGGCAGCAACTTGAAGAAGGACAATGAACATGTGACCTGGGCTTTTGA
TCTTCAGGCTGCCACAGACATGTTTAATTCTTACAGAGATAGAAGCTACTGGGCACTGCT
GGAGAACCCACCAAAGGGTTTGGAGATCTCAATAGTACAGGCAGAGCTCAGTGATAGATG
GCACCCTGATGATGTCCAGAGGCTAAAAGCACTATCAAGGAGAGGCAGAAAACCTGACGT
GGGGAAAGTGTCACTCCACGTCCTCCCCAACTCCGGCCATTGGGTTCACGTGGACAACCC
CAAGGGGCTGCTCGAGATCATGGCGCCTAACTTCCTCTCCGCTGTTCAAAATTGACCTGT
TATTTTACTGTCAACTCCAGCCTTGTGACAGTGCATCTTGTCGCGTTTGATCACACGAAG
GATACTTATTCATGCTCTCTTACTGTGATTGGATGAGAGCATTTTGTGCTTTCTGTTAAT
AAAAGTGATTTGATCAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK367531	1192	0.0	4 - 1190	99	1176 / 1187	CUST_30694_PI390587928	ABC12595
MLOC_68397.1	908	0.0	1 - 908	100	908 / 908	CUST_30694_PI390587928	ABC12595
MLOC_68397.2	1025	0.0	213 - 1025	100	813 / 813	None	ABC12595
AK249931.1	1865	4e-118	545 - 784	99	237 / 240	None	ABC12595
MLOC_12419.1	1969	1e-143	1 - 277	100	277 / 277	CUST_12416_PI390587928 CUST_15020_PI390587928	ABC05353 ABC05354 ABC09489 ABC12595
MLOC_34005.1	145	8e-66	1 - 143	99	141 / 143	None	ABC12595