- Probe CUST_15020_PI390587928
- Source Contig U35_18781
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15020_PI390587928 | Hv_44K_v2 | GTTGATACGACTTGTAAACCCTCTACTTTTCAAGGTTTCCTTTCATGTTCTCTTACAAAA | 702 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.352 | 6.267 | 1.569 | 0.655 | 0.874 | 0.779 |
| Raw | 65.508 | 84.762 | 16.387 | 10.780 | 3.892 | 4.013 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12419.2 | 1138 | 2e-24 | 512 - 571 | 100 | 60 / 60 | plus | ABC05353 ABC05354 ABC09489 |
| MLOC | MLOC_12419.3 | 1034 | 2e-24 | 451 - 510 | 100 | 60 / 60 | plus | ABC05353 ABC05354 ABC09489 |
| MLOC | MLOC_12419.1 | 1969 | 2e-24 | 1343 - 1402 | 100 | 60 / 60 | plus | ABC05353 ABC05354 ABC09489 ABC12595 |
| JLOC1 | JLOC1_8329.2 | 2605 | 8e-25 | 1509 - 1568 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_8329.1 | 2836 | 8e-25 | 1740 - 1799 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_8328.1 | 1910 | 8e-25 | 796 - 855 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09489 | 819 | 3e-25 | 703 - 762 | 100 | 60 / 60 | plus | ABC09489 |
| Harvest35 | U35_18781 | 819 | 3e-25 | 703 - 762 | 100 | 60 / 60 | plus |
Contig Sequence (819 bp)
>U35_18781 819 Hv_44K_v2 GCCTGCCTCCCTCCCTCCTCCTCAGAAAGAGAAAACACATGGCGGCTGCGACTGCAAGGC AGCTGTTGGTCCACAGGATCACTTCCTCCTGCTCCTCGGGGACGCTTCCCAAGCACGCTT CCAGCAGCCATGGCATCTCTGCTTACAGCTCCAGGTGCTTCCACAAGGCCGAGAAGCTCC CCGGTTTCAGGGCGAGGGTGCCCGTGAAGCCGCCGCGCGCCGTGCCGGGGAAGGCCGGCA TTGTGCCGGCCGACGATGATGGGGTCAGCCTCGGCACCGTCAAGCTGCCCGCCAACATCG ACGTCGCTCGGTTCGAGGGGCTGCTCTTTCAGTGGGGAAACAGTCTATGCCAAGGCGCCA TGTTGCCACTACCAGTGCCTATCAAGGTGGACAAGGTGGAGGGTGGGATCAGGCTAGGGT TCATTGGGATCGACGACGGCGCGACCTCGCTGCTGGCCTACATCGACTGCTTGGTGTCTC CAGCGACCGACGGCTCCGGGTTTGTGTTCCGAGCAACCAGGAACGGTGCTATGAAGGACA TGGAGCCGCCTGGGGAGCCCAGGATCATGAGGAGCCTCCTCATGGCGCTTCAGAAGTCCA TCCAGATTGCGCAAGTTTGACAAGCCTCTTCAGATTGTGCAAATTTGACAAGTCTGCTAA ACAGTAATTAAGGAAATTGATGAAGCAGGATTGCTGTTCTCTGTTGATACGACTTGTAAA CCCTCTACTTTTCAAGGTTTCCTTTCATGTTCTCTTACAAAATAAAGATACAAATTCCAT TAGAGGAAGTATATAAAAGCTAAAAAAAAAAAAAAAAAA
Homology of Contig U35_18781 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g64270.1 | 187 | 3e-67 | protein|expressed protein |
| Brachypodium v1_2 | Bradi2g55750.1 | 193 | 5e-85 | |
| Arabidopsis v10 | None |