barSeed - Barley Seed Development Database

Probe ABC12425

Source Contig ABC12425

barSeed

Links

Affymetrix Source Sequence (846 bp)

>ABC12425 846
GCATCTTGGTCAGATGTTGATACAGATTAATCAGCCGTGCCCAGCATGGTACGTTTATTC
CTTACATAAATAAATAAATCTTGCAGAAATGTAAAGCTGCTGCCTTGTGACCATGAGGTC
ATGGGTTCAATTCCTGGAAACAGCCTCTTGCAGAAATGTAGGGAAAGGCTGCGTACAATA
GACCCAAAGTGGTTGGACCTTCCTCGGACCCTGCGCAAGCGAGAGCTAGGTGCACCGGGC
TGCCCTTTTTTTACAAATAAATAAATCTATTGAGCTTAATTTTCCAAACCAAGAATACAT
AACAACCGTAGCATTGGTCAGATGTTCGTACAAACTAATGAGAAGAAAAAGGGAAGTTTG
ATGAGCTTGTTGAAGAGAAAGGTGTGAAAGTACTGATTGACCCCAAGGCCCTGATGCATG
TGATTGGCACCAAGATGGACTTCGTTGACGATCCACTGAGGTCGGAGTTTGTGTTCATAA
ACCCGAACTCGAAAGGGGAATGTGGATGTGGTGAATCTTTCATGACTACGGGCAGCAAAG
GATCTACGTCATGATGCGTCATGCTATGATGTAAATAGAGCGAAGCGTGTGCAGTGGTGG
CTCTAGTTACTGATATAATTTTGTCTTGGAAAGCAACGGCCATTGTAAGCTTGTTGCGTT
TGCATCCTAGTAGTGAACACTGCACTTGATTTAATCACCTCATGGGTGAACCAGCCTGTT
ACCGGTGCTCTTACATTCATCTTGGCCATGTTGTTGTTACGTTCACTAATTCTTGTTTGG
GAACAAAATAAACACAGCAATATTCCTTCTTTTGTTATTCTGATACGATGCCGTCTGGTG
TATTTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360422	931	0.0	398 - 901	100	504 / 504	CUST_3718_PI390587928	ABC12425
AK360962	918	0.0	438 - 918	100	481 / 481	None	ABC12425
MLOC_15563.1	1545	0.0	981 - 1485	98	494 / 505	None	ABC12425
AK363145	3565	2e-65	2890 - 3050	95	153 / 161	CUST_38196_PI390587928 CUST_213_PI415269222	ABC10458 ABC10459 ABC10460 ABC12425 ABC38132
AK248158.1	1834	9e-64	504 - 664	94	152 / 161	CUST_38196_PI390587928 CUST_25818_PI390587928	ABC10458 ABC10459 ABC10460 ABC12425 ABC38132
MLOC_35937.1	254	9e-59	100 - 254	94	145 / 155	None	ABC12425 ABC18237 ABC38132 ABC47436
MLOC_58712.5	2072	7e-55	1175 - 1325	92	143 / 155	CUST_11626_PI390587928	ABC12425 ABC41710
MLOC_58712.10	2113	7e-55	280 - 430	92	143 / 155	CUST_22985_PI390587928	ABC12425
MLOC_56859.1	1587	7e-55	81 - 237	92	144 / 157	None	ABC12425 ABC38132
MLOC_4480.5	1014	7e-55	719 - 881	90	146 / 163	None	ABC12425 ABC13287 ABC24126
MLOC_30677.2	659	9e-54	397 - 560	90	148 / 164	None	ABC12425
MLOC_21103.1	1860	3e-53	1 - 145	93	135 / 145	CUST_16099_PI390587928	ABC12425 ABC18237 ABC38132 ABC47436
MLOC_3979.2	3171	3e-53	1246 - 1393	93	137 / 148	None	ABC07101 ABC12425 ABC38132
MLOC_3979.4	3098	3e-53	1173 - 1320	93	137 / 148	None	ABC07101 ABC12425 ABC38132
MLOC_3979.6	2433	3e-53	701 - 848	93	137 / 148	None	ABC07101 ABC12425 ABC38132
MLOC_75498.2	2515	1e-52	1129 - 1287	91	144 / 159	CUST_22094_PI390587928 CUST_35081_PI390587928	ABC12425 ABC19689
MLOC_75498.7	2496	1e-52	1147 - 1305	91	144 / 159	None	ABC12425 ABC19689
MLOC_75498.8	2040	1e-52	1139 - 1297	91	144 / 159	None	ABC12425 ABC19689
MLOC_75498.5	2929	1e-52	1203 - 1361	91	144 / 159	CUST_22094_PI390587928	ABC12425 ABC19689
MLOC_75498.3	3351	1e-52	1219 - 1377	91	144 / 159	CUST_22094_PI390587928	ABC12425 ABC19689
MLOC_75498.1	2809	1e-52	1237 - 1395	91	144 / 159	CUST_22094_PI390587928 CUST_35081_PI390587928	ABC12425 ABC19689
MLOC_68460.4	2002	1e-52	884 - 1039	91	142 / 156	None	ABC12425
MLOC_68460.1	3035	1e-52	1911 - 2066	91	142 / 156	CUST_12420_PI390587928 CUST_35239_PI390587928	ABC12425 ABC12450
AK369157	2303	2e-51	1023 - 1190	89	150 / 168	None	ABC12425
MLOC_22184.1	6194	6e-51	2213 - 2382	88	151 / 171	CUST_30395_PI390587928 CUST_4876_PI390587928 CUST_22427_PI390587928 CUST_18143_PI390587928	ABC12425 ABC15227 ABC33324 ABC38132
MLOC_22183.3	2583	6e-51	1605 - 1774	88	151 / 171	CUST_4876_PI390587928 CUST_22427_PI390587928	ABC12425 ABC38132
MLOC_22183.1	2026	6e-51	1008 - 1177	88	151 / 171	CUST_4876_PI390587928 CUST_22427_PI390587928	ABC12425 ABC38132