barSeed - Barley Seed Development Database

Probe ABC12390

Source Contig ABC12390

barSeed

Links

Affymetrix Source Sequence (994 bp)

>ABC12390 994
GGAAACCCAGAAAAAACTGACGGAGGTGAAGATCGTTGAAGGTCCCCTTGTTCGTTCGTC
CATATTCATAGCGCGAGAGGACTGGATTGTGGCCGGTGATGGTCATGGGGTCATCCACGT
GCGATCGTGCAAGACACTGGGGTTGGAGGAGGTCAAGAAATTCAAAGCTCACGATGGTTG
GATCCAAGCACTGGCGGTTCACCCCAGCCTCCCACTTATGGTGTCAGGAGGATGCTATGA
AGGCTTGGTCAAGCTTTGGGACTGGGGGAAAGACTGGACGTGCCTTCGAACGTTCAAAGC
GCACAGAGACAAAGTTGAGGCACTCCAGTTTAACCCACAGAATGATACCCCTGACTGCGT
CACTTTTGCCAGTGGCGCCCCGGATGGCAAAGCAATGATCTGGGATATCAAATTAACCCC
TCCAATCGCCATGTTAGACTGCCAGATGGAACAAGTGATGGATCTCGATTATTTCCTTCC
GGGTGGTAATGAGCAATACATTATTACAGGATGTATAGCTGGGAATACTCGGATCTGGGA
TTTGCGGACACACAAATGTGTTCGAGTAATCAAAGGAACCAGCATAGGTTCTGCCGGCTG
CCGTGCTCGTGTGGTATATCGTCACCCGGACCCTCAACTGCTGATTAGAACTTTCCAGGA
CGAGAGCCTTGGTTTGTGCAACACCACTACCTTTAGGTATACAGAATCAATTAATTTTGG
ACTCGAGAAGTGTCGGAATATAGTATATGTTAAGGGCATAAGAAGTGTTGTGATCGGATT
TACAAAGGGGCTGGCAATCTTGGAAATCAACTAATTTTCCATGTTGGGGCAAAGAGGATG
GGAGTATCGAACTGCAAGTGGAAACAACTGATATCTACTCACTTGCTTCATAAACTATTG
TCTTCGATAATTTCAAACCTTTCTATCACGTTGGTTGATGCTGAACAGTTGGTGATGCTT
TTGGTACAATTCACACTGATGTAATGCACATATG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251994.1	3005	0.0	2000 - 2992	99	986 / 993	CUST_36165_PI390587928 CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016 ABC18418
AK355574	4044	2e-111	3748 - 3978	98	227 / 231	CUST_20606_PI390587928 CUST_40901_PI390587928 CUST_36165_PI390587928	ABC12390 ABC18016 ABC18418
MLOC_14397.6	2287	0.0	1 - 381	100	381 / 381	CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016
MLOC_14397.7	3495	0.0	1 - 381	100	381 / 381	CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016
MLOC_14397.1	3279	0.0	1 - 381	100	381 / 381	CUST_40901_PI390587928 CUST_20606_PI390587928	ABC12390 ABC18016
MLOC_14397.2	2022	0.0	1 - 381	100	381 / 381	CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016
MLOC_14397.3	2416	0.0	1 - 381	100	381 / 381	CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016
MLOC_14397.4	2346	0.0	1 - 381	100	381 / 381	CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016
MLOC_14397.5	2230	0.0	1 - 381	100	381 / 381	CUST_40901_PI390587928 CUST_20606_PI390587928	ABC12390 ABC18016
MLOC_14397.8	2409	0.0	1 - 381	100	381 / 381	CUST_20606_PI390587928 CUST_40901_PI390587928	ABC12390 ABC18016
MLOC_58880.1	741	7e-145	69 - 368	98	293 / 300	CUST_36165_PI390587928	ABC12390 ABC18418
MLOC_58879.1	1191	7e-145	182 - 481	98	293 / 300	CUST_36165_PI390587928 CUST_40876_PI390587928	ABC12390 ABC18418
MLOC_14396.1	375	1e-127	1 - 248	100	248 / 248	None	ABC12390
MLOC_58879.2	2433	2e-111	182 - 412	98	227 / 231	CUST_36165_PI390587928 CUST_40876_PI390587928	ABC12390 ABC18418