barSeed - Barley Seed Development Database

Probe CUST_40876_PI390587928

Source Contig U35_19214

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40876_PI390587928	Hv_44K_v2	CGATGAAGATGTTGTGTTCTTATATATGGCGCTATCAACATGGATATGATGTTGTTATGA	1061	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.858	8.085	1.715	0.623	0.455	0.425
Raw	136.233	211.709	35.600	21.781	3.115	4.059

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58879.1	1191	2e-24	55 - 114	100	60 / 60	minus	ABC12390 ABC18418
MLOC	MLOC_58879.2	2433	2e-24	55 - 114	100	60 / 60	minus	ABC12390 ABC18418
JLOC1	JLOC1_38280.1	1082	8e-25	23 - 82	100	60 / 60	minus
JLOC1	JLOC1_38279.2	1051	8e-25	810 - 869	100	60 / 60	plus
JLOC1	JLOC1_38279.1	886	8e-25	645 - 704	100	60 / 60	plus
Harvest35	U35_19214	1164	3e-25	1062 - 1121	100	60 / 60	plus

Contig Sequence (1164 bp)

>U35_19214 1164 Hv_44K_v2
GGAAACCCAGAAAAAACTGACGGAGGTGAAGATCGTTGAAGGTCCCCTTGTTCGTTCGTC
CATATTCATAGCGCGAGAGGACTGGATTGTGGCCGGTGATGGTCATGGGGTCATCCACGT
GCGATCGTGCAAGACACTGGGGTTGGAGGAGGTCAAGAAATTCAAAGCTCACGATGGTTG
GATCCAAGCACTGGCGGTTCACCCCAGCCTCCCACTTATGGTGTCAGGAGGATGCTATGA
AGGCTTGGTCAAGCTTTGGGACTGGGGGAAAGACTGGACGTGCCTTCGAACGTTCAAAGC
GCACAGAGACAAAGTTGAGGCACTCCAGTTTAACCCACAGAATGATACCCCTGACTGCGT
CACTTTTGCCAGTGGCGCCCCGGATGGCAAAGCAATGATCTGGGATATCAAATTAACCCC
TCCAATCGCCATGTTAGACTGCCAGATGGAACAAGTGATGGATCTCGATTATTTCCTTCC
GGGTGGTAATGAGCAATACATTATTACAGGATGTATAGCTGGGAATACTCGGATCTGGGA
TTTGCGGACACACAAATGTGTTCGAGTAATCAAAGGAACCAGCATAGGTTCTGCCGGCTG
CCGTGCTCGTGTGGTATATCGTCACCCGGACCCTCAACTGCTGATTAGAACTTTCCAGGA
CGAGAGCCTTGGTTTGTGCAACACCACTACCTTTAGGTATGCAGAATCAATTAATTTTGG
ACTGGAGAAGTGTCGGAATATAGTATATGTTAAGAGCATAAGAAGTGTTGTGATTGGATT
TACAAAGGGGCTGGCAATCTTGGAAATCAACTAAATTTCCATGTTGGGGCAAAGAGGATG
GGAGTATCGAACTGCAAGTGGAAACAACTGATATCTACTCACTTGCTTCATAAACTATTG
TCTTCAATAATTTCAAACCTTTCTATCACGTTGGTTGATGCTGAACAGTTGGTGATGCTT
TTGGTACAATTCAGACTGATGTAATGCACATATGAAACCTTTCTGTCATGTTGTTGATGT
ACTGCTGGCATTGTTGCTATGCTGATATCGTGTTTTTAGGACGATGAAGATGTTGTGTTC
TTATATATGGCGCTATCAACATGGATATGATGTTGTTATGATTGATATGATGCTATGAAA
ATTGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None