barSeed - Barley Seed Development Database

Probe ABC12242

Source Contig ABC12242

barSeed

Links

Affymetrix Source Sequence (807 bp)

>ABC12242 807
GGTGGCCTTGGAAATTGGCAGAACCAAAAGATTCCATATATGTACTTGACAACTGCCCTC
ATGACTGGCTTTTCCTGCAGTGTAAGGCAGTGGTACACCATGGTGGTGCTGGAACGACGG
CTGCTGGCCTGAAAGCAGCGTGTCCTACAACTATTGTACCTTTCTTTGGCGACCAACCTT
TCTGGGGAGAGCGGGTGCATGCTAGAGGGGTAGGGCCTTCGCCTATACCTGTTGATCAAT
TCAGTTTGCAGAAGTTGGTTGATGCTATAAACTTCATGTTAGATCCAGAGGTGAAAGAAA
AAGCCGTGGAGCTTGCAAAGGCCATGGAATCTGAAGACGGCGTAACGGGCGCAGTTAGGG
CATTCCTCAAACATTTGCCTTGTAAAACAGATGAAAATTCACCCCCGCCGACGCATGGCT
TTCTAGAGTTCCTTGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGAT
GCAGGTATACCATTCCTCCCTGCTGAAAGAAGAGTGTAAAAAAAGGCTCTTGGGTGACCG
CTATGCCATTGTGTGCGATAAGAATGTGGAAGCCAAATGTTAGAAGTTGATGTACATGCG
GCCAGGAATGCGTGATTTATCATTTTGCTTTCTTTTTGTATGTGTGTTGTGTAAAGAGTA
CTTGTCTGGTGATTTCATACATCATTTTGGTGTGGTTGCAACCTTGGCGTGCGGCAACCG
ATGATCTCTCATGTATGACCAGGCAACTTGTGTATATGGAAAACTTGAAAGAGGGCAGAT
TAGTTCAGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK358163	2036	0.0	1337 - 2036	99	699 / 700	CUST_3265_PI390587928	ABC12242
MLOC_67214.2	674	0.0	1 - 674	97	658 / 676	None	ABC12242
MLOC_67214.1	996	0.0	347 - 995	97	632 / 650	None	ABC12242
MLOC_67214.3	967	0.0	1 - 578	97	564 / 579	None	ABC12242
MLOC_78185.1	1076	0.0	464 - 966	100	503 / 503	CUST_29710_PI390587928 CUST_204_PI415269222	ABC12242
MLOC_61342.1	1644	5e-66	435 - 575	99	140 / 141	CUST_3265_PI390587928	ABC12242