barSeed - Barley Seed Development Database

Probe CUST_204_PI415269222

Source Contig TA43015_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_204_PI415269222	Hv_44K_v2	CTCTCATGTATGACCAGGCAACTTGTGTATATGGAAAACTTGAAAGAGGGCAGATTAGTT	733	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.298	1.426	1.074	1.003	0.455	0.434
Raw	2530.667	4333.190	2866.373	4158.460	677.469	695.605

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78185.1	1076	2e-24	901 - 960	100	60 / 60	plus	ABC12242
JLOC1	JLOC1_52112.1	927	8e-25	64 - 123	100	60 / 60	minus
Harvest21	ABC12242	807	3e-25	726 - 785	100	60 / 60	plus	ABC12242
Harvest35	U35_5491	807	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (796 bp)

>TA43015_4513 796 Hv_44K_v2
CACGAGGGTGGCCTTGGAACATTGGCAGAACCAAAAGGATTCCATATATGTACTTGACAA
CTGCCCTCATGACTGGCTTTTCCTGCAGTGTAAGGCAGTGGTACACCATGGTGGTGCTGG
AACGACGGCTGCTGGCCTGAAAGCAGCGTGTCCTACAACTATTGTACCTTTCTTTGGCGA
CCAACCTTTCTGGGGAGAGCGGGTGCATGCTAGAGGGGTAGGGCCTTCGCCTATACCTGT
TGATCAATTCAGTTTGCAGAAGTTGGTTGATGCTATAAACTTCATGTTAGATCCAGAGGT
GAAAGAAAAAGCCGTGGAGCTTGCAAAGGCCATGGAATCTGAAGACGGCGTAACGGGCGC
AGTTAGGGCATTCCTCAAACATTTGCCTTGTAAAACAGATGAAAATTCACCCCCGCCGAC
GCATGGCTTTCTAGAGTTCCTTGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCT
GGTCAGATGCAGGTATACCATTCCTCCCTGCTGAAAGAAGAGTGTAAAAAAAGGCTCTTG
GGTGACCGCTATGCCATTGTGTGCGATAAGAATGTGGAAGCCAAATGTTAGAAGTTGATG
TACATGCGGCCAGGAATGCGTGATTTATCATTTTGCTTTCTTTTTGTATGTGTGTTGTGT
AAAGAGTACTTGTCTGGTGATTTCATACATCATTTTGGTGTGGTTGCAACCTTGGCGTGC
GGCAACCGATGATCTCTCATGTATGACCAGGCAACTTGTGTATATGGAAAACTTGAAAGA
GGGCAGATTAGTTCCG

Homology of Contig TA43015_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g04254.2	587	1e-72	protein\|sterol 3-beta-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g01230.1	615	5e-76
Arabidopsis v10	AT3G07020.2	637	5e-54	UDP-Glycosyltransferase superfamily protein \| chr3:2218120-2221590 REVERSE LENGTH=637