barSeed - Barley Seed Development Database

Probe ABC12214

Source Contig ABC12214

barSeed

Links

Affymetrix Source Sequence (649 bp)

>ABC12214 649
AAAATAAGTTTCAAGAGGGAAGTCCTACGACGGCATAATCACCCCGNNCAAGAACAAAGA
AGTGTGCCAGGGCCCTGGCGCCATAGTCTGCGAAGAAGAAGCTGTTCCCGCGCTCTGTGG
ATTCCGGGCCATCTGGGTGGTGCCATCGTGCAGAAGAAAGGGAATAGCATCACAGCTAGT
GGATGCTGCAGGAAGAGCTTCTGCGAAGATGGCGCATTGGGGATATCACAATGCGCTTTC
ACGCCACCAACCTCTGACGGGAAGGAGCTAGCGTCAAGCTGCTACAAGACCAGTGCATTC
TTAGTCTACAGGAATGGAGATGTATAGAGAGGTCCTCCCAAAATTGGAAAGCAAGTGTTA
AACAGCTGCAAAAGTCAGTCATGTTGAGTACTTGACACATAAACAGGGCACATTCTGCTC
TTATAGTGCCGAGGTCGTCATGTTTTCTTCCGTCGGCAAAGATAGCCGAATGCTGTTACA
AGCTACTGTATTTCATTATCAGTTTGTCAATATAGCGAGGCCTGACATGTTTAGACAATT
TGTAGAGAAAAATAGCAGCTGGCAAACACAACCAGAGTCACTCGAATTCTCATTTTTCAT
TAAAAAAAAAGAAAGAACCACACAAATGTATCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366425	1689	0.0	1025 - 1656	99	628 / 634	CUST_17466_PI390587928 CUST_39139_PI390587928 CUST_38085_PI390587928	ABC12214 ABC47567
MLOC_67333.1	1498	0.0	426 - 1057	99	628 / 634	CUST_17466_PI390587928 CUST_38085_PI390587928	ABC12214 ABC47567
MLOC_67334.1	3942	1e-90	776 - 964	98	187 / 190	CUST_17466_PI390587928 CUST_38085_PI390587928	ABC12214 ABC47567
MLOC_67334.2	3753	1e-90	748 - 936	98	187 / 190	CUST_38085_PI390587928 CUST_17466_PI390587928	ABC12214 ABC47567