barSeed - Barley Seed Development Database

Probe CUST_17466_PI390587928

Source Contig U35_22293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17466_PI390587928	Hv_44K_v2	TAGACCAGTCAACCCTTGGATAACACAAGCATCATGATACATTTGTGTGGTTCTTTCTTT	713	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.778	1.998	1.050	0.839	0.335	0.440
Raw	780.190	1389.833	637.506	824.395	110.693	160.851

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248541.1	2177	2e-24	2071 - 2130	100	60 / 60	plus	None
MLOC	MLOC_67334.1	3942	2e-24	1623 - 1682	100	60 / 60	minus	ABC12214 ABC47567
MLOC	MLOC_67334.2	3753	2e-24	1595 - 1654	100	60 / 60	minus	ABC12214 ABC47567
MLOC	MLOC_67333.1	1498	2e-24	1032 - 1091	100	60 / 60	minus	ABC12214 ABC47567
MLOC	AK366425	1689	6e-24	1631 - 1689	100	59 / 59	minus	ABC12214 ABC47567
JLOC1	JLOC1_44448.1	2586	8e-25	2105 - 2164	100	60 / 60	plus
JLOC1	JLOC1_44447.1	1842	8e-25	1032 - 1091	100	60 / 60	minus
Harvest21	ABC12215	995	3e-25	920 - 979	100	60 / 60	plus
Harvest35	U35_22293	816	3e-25	714 - 773	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_22293 816 Hv_44K_v2
CTATACTCGAATGATGTCGGACAAGGTGAAGCTTTGTTGCAAAGAACATTTCACAGGGCA
GGGCTATCTTCTCCAAGCATTATATTTTTTGATGACGCTGCTGCAGTTGCTCCTAAAAGA
ACCGGTCCTAGTGGGGACACTGGCAATGCCACAGTAGGACAAAGACTCCTATCAACTTTG
TTGACTGAAATGGATGGTTTAGAACTGGCTACGGGGATTATTGTTTTGGCCGCTACTAAC
CGCCCCAAGGCAATCGATGCAGCTCTTCTCCGCCCAGGGCGCTTTGATATGGTGTTGTAC
GTTCCACCGCCAGATGCACAAGGCAGGCAAGAGATATTACGCATCCATACACGGAAGATG
AAGCTGGGGGAGGATGTGGACGTTGGGGAGATAGCGGAGCGCACCGAGCTGTTCACTGGT
GCTGATCTCGAAGGCCTGTGCAGGGAAGCAGGAATGGCGGCACTGAGGGCAGACCTGTCA
GCCAGTTCGATACACAAGGCTCACTTCGAGGCCGCAATAAGGTCGCTAAGGCCGTCGCTG
ACGAAAGCAGAAGTTGACGAGTACGCAGCTGCCGCCATACATGGCCCATCAGCTAGGAAA
CATTAGACCATGATGAGGAAACATTAGACTATGATGTATCTATTGAGCTTTTGTTCAAGT
TCGTGTTACACAAGCATTTTAGACCAGTCAACCCTTGGATAACACAAGCATTTTAGACCA
GTCAACCCTTGGATAACACAAGCATCATGATACATTTGTGTGGTTCTTTCTTTTTTTTAA
TGAAAAATGAGAATTCGAGTGAAAAAAAAAAAAAAA

Homology of Contig U35_22293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42110.1	579	1e-96	protein\|cell division control protein 48 homolog B, putative, expressed
Brachypodium v1_2	Bradi5g14660.1	566	1e-108
Arabidopsis v10	AT2G03670.1	603	9e-73	\| Symbols: CDC48B \| cell division cycle 48B \| chr2:1117595-1120361 FORWARD LENGTH=603