barSeed - Barley Seed Development Database

Probe ABC11931

Source Contig ABC11931

barSeed

Links

Affymetrix Source Sequence (584 bp)

>ABC11931 584
GAACAATTGGTGTGATTTTTTTTGTTTAGCTGTACGTTGTAGGAACACAGAACCTGGTTA
TTTTATTATATTCGTTGTCTAATTTATTTTCTGCTACGAGGGATCAAGTTCAGTAATTTC
TTTTATCTTCTTTCTTCCTCATAATTTTACATTTACTCACTGAGCAGTAAAGGTCTTGGA
CCTGAAATTCTTGTAGTACTAATTTAACATAACTGTTCTTCGAGAAAATGGCTTGCGAAG
GTCTTGGACACTGCAAAAATGGTTGCAGTCCTCATAGGTTGTCCTGGCGAACTCCAAGAC
GACGTCGAAGAAAGACTCCGGTTGTACGTCTTGCCCATAAGGAGGTTTGGCAGTTAGTTC
GTGTTACTATCGATCGAGGATTTTTAGCAGGAATTACTTGGGTCTGAAAAGCTTCCTGGA
AGTGGTGGTGTAGTGTTGGAGATTAAAATTATGTAGTAGTGCAGTTTCAATGATGTCATG
TTACTTGATTTTTATTAAATGCTTATGCTTACAACACCTTGTAAATATCCTTGTGATGTT
TTGATATTAATTTTGCTTTTTGAAATCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_30879.5	1036	2e-173	353 - 697	99	340 / 345	CUST_18112_PI390587928	ABC11931
MLOC_30879.4	1326	2e-173	642 - 986	99	340 / 345	CUST_18112_PI390587928	ABC11931
MLOC_30879.1	1680	7e-128	937 - 1199	98	258 / 263	None	ABC11931
MLOC_30879.2	1407	7e-128	642 - 904	98	258 / 263	None	ABC11931
MLOC_30879.3	1121	7e-128	356 - 618	98	258 / 263	None	ABC11931
AK372854	3750	2e-93	3512 - 3736	94	213 / 226	None	ABC10671 ABC11195 ABC11931 ABC24670 ABC45247 ABC49762
MLOC_32478.1	318	1e-85	41 - 266	92	209 / 228	None	ABC11195 ABC11931 ABC45247