barSeed - Barley Seed Development Database

Probe ABC11470

Source Contig ABC11470

barSeed

Links

Affymetrix Source Sequence (1635 bp)

>ABC11470 1635
GGATCTCTTTGAGCGCATCTGGTCCGTCGATCGGTTAGAGCGTCTTGGAATCTCGCGCTA
TTTCAAGCAAGAAATCAAGCAGTGCTTGGATTATGTTCACAGGCACTGGACTGATGAGGG
GATTTGCTGGGCGAGGAACTCCACTGTAATAGACGTGGATGATACATCCATGGCATTCCG
GCTGCTGCGGCTTCATGGATACGATGTCTCCCCAAGTGTATTTGGGAAGTTTGAGAAGGA
CGGGGAGTTCTTCTGTTTCGTGGGGCAATCAACACAAGCAGTCACTGGGATGTACAACCT
GAACAGGGCCTCTCAGGTAAGGTTCCCTGGAGAGGACTTGTTGCAGCGTGCAGGGAGATT
CTCGTATGAGTTCCTTAGAGAAAGGGAAGCCCATGGCACGATTCGAGACAAATGGATCAT
TGCTAAGGATCTACCAGGCGAGGTAAAATATACACTGGACTTCCCATGGTATGCAAGCTT
ACCGCGTGTAGAAGCAAGAGTCTACCTAGATCAATATGGCGGTGATAATGATGTCTGGAT
TGGGAAGACACTCTACAGGATGCTACTTGTGAACAACAACACCTATCTTGAGTTGGCAAA
GCGTGATTTCAATCGCTGCCAAGTCCAACATCAGCTTGAGTGGCATGGCCTGCAAAAGTG
GTTTATTGAGAATGGCCTCGAGACTTTTGGGGTGACTTTAAGAGATGTTTTGAGAGTTTA
TTTTCTAGCTGCCGCTTGCATTTTCGAGCCAAGCCGTGCCACCGAGCGACTTGCATGGGC
CAAGGTGTCAGTGCTGGCCAACATTATTACTAAAAACCTTCATAGCGATTTGTCGGGTAA
TGAAATGATGGAACGGTTTATGCATGGCGGTATCTACGAAGGAAATAGTAATATATCTTG
GCGTAAAGGAGATGCAAAAGAGGACAGTCTTGTGGGGGCACTTGAGCAGCTTATTGATTT
GTTGGCACAAGAGGCACTACTTGTTGGTGAAGAACCAATGTACATCAACAATTTGTTACG
CCGCGCTTGGATCGAATGGATGATGCAACAGATAAATAGAGAGGATGACACATCCGATAC
AAGTGTTATTCAAGCAGGGTCATGCATGGTTCATGATAAACAAACATATTTGCTTCTAGT
CAAAATTATTGAGATTTGTGGTGGACGATATGGTGAAGCATCATCGATGATAAACAACAT
GGATTGTGCCTGGTTTATTGAGCTCGCGTCCTCTATTTGTGACAGTCTTCACCGCAAGAT
GTTACTTTCTCAGGACACTGAGAAGAACGAGGTGATGGTGTGCCACATGGATGAGAAAAT
CGAGGCGGGCATGCAGGAACTCGCCCGGAACGTCCTCCAGTCGGCGCACGGCGATGGGGC
GAGCAGCGAGACGAAGCAGACCGTATTGAGCGTTGTCAGAAGCTGTTACTACGCCGCTAA
CTGCCCTCTCCATGTTTTGGATGGTCATGTCTTGAAGGTCATTTTCGAACATGTGTTTTG
AAAGAAAGAAAGAAAGAAGAAATTGTCCTGCAATGGTAGGGATGGATGGGATATGTATGT
ATGTACATGGAAAAGAATGCTGTAAAAAGTAACAGTGGAAAAATTGTCAAGTTGGATTGG
TTGTTTGGTCAGGGG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_5927.1	3307	0.0	1298 - 2931	99	1631 / 1634	CUST_23906_PI390587928 CUST_11832_PI390587928	ABC11470
MLOC_5927.2	2324	0.0	208 - 1844	99	1633 / 1637	CUST_23906_PI390587928 CUST_11832_PI390587928	ABC11470
MLOC_5927.4	2659	0.0	1 - 1577	100	1577 / 1577	CUST_11832_PI390587928	ABC11470
MLOC_5927.6	3171	0.0	1 - 1406	100	1406 / 1406	CUST_11832_PI390587928	ABC11470
MLOC_5926.5	2162	0.0	504 - 2013	90	1366 / 1514	CUST_11832_PI390587928 CUST_23907_PI390587928	ABC11470
MLOC_5926.4	2508	0.0	850 - 2359	90	1366 / 1514	CUST_23907_PI390587928 CUST_11832_PI390587928	ABC11470
MLOC_5926.3	2796	0.0	1174 - 2683	90	1366 / 1514	CUST_23907_PI390587928 CUST_11832_PI390587928	ABC11470
MLOC_5927.3	2823	0.0	1174 - 1831	100	658 / 658	CUST_11832_PI390587928 CUST_23906_PI390587928	ABC11470
MLOC_5926.2	2551	0.0	1174 - 2448	92	1172 / 1275	CUST_11832_PI390587928	ABC11470
MLOC_5927.5	2685	0.0	964 - 1621	100	658 / 658	CUST_11832_PI390587928	ABC11470
MLOC_13970.2	1221	0.0	293 - 1198	87	784 / 906	None	ABC11470
MLOC_5927.7	508	0.0	3 - 508	100	506 / 506	None	ABC11470
MLOC_11097.2	949	1e-154	85 - 528	89	395 / 444	None	ABC11470
MLOC_11097.1	1073	7e-152	85 - 531	89	396 / 447	None	ABC11470
MLOC_11097.4	946	7e-137	1 - 406	88	359 / 406	None	ABC11470
MLOC_11097.3	829	3e-131	1 - 410	88	359 / 410	None	ABC11470